48 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LJ31	Decapping protein 1. (298 aa)
	A0A090LJM6	CCR4-NOT transcription complex subunit 1. (2066 aa)
	A0A090LJP5	U6 snRNA-associated Sm-like protein LSm2. (428 aa)
	A0A090LK28	Exosome complex component RRP46. (223 aa)
	A0A090LL84	WD40/YVTN repeat-like-containing domain and WD40-repeat-containing domain-containing protein. (889 aa)
	A0A090MWW1	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. (433 aa)
	A0A090MX67	Uncharacterized protein. (307 aa)
	A0A090MXZ6	Pop2. (304 aa)
	A0A090MY90	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (81 aa)
	A0A090MYC8	U6 snRNA-associated Sm-like protein LSm1. (123 aa)
	A0A090MYC9	Exosome complex component RRP4. (299 aa)
	A0A090MYP0	Poly(A) RNA polymerase GLD2. (526 aa)
	A0A090LNP8	M7GpppN-mRNA hydrolase. (514 aa)
	A0A090LNT1	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (665 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	A0A090KZK0	Uncharacterized protein. (78 aa)
	A0A090KZW3	Exosome complex component RRP45. (299 aa)
	A0A090L0R7	Belongs to the eukaryotic initiation factor 4E family. (222 aa)
	A0A090L105	Exosome complex component RRP42. (324 aa)
	A0A090L1V8	Uncharacterized protein. (375 aa)
	A0A090L2I6	annotation not available (249 aa)
	A0A090L2S2	UPF0692 protein C19orf54. (242 aa)
	A0A090L2U7	Exosome complex component CSL4. (685 aa)
	A0A090L365	Topoisomerase II-associated protein PAT1 family-containing protein. (677 aa)
	A0A090L428	Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family. (413 aa)
	A0A090L5P9	CCR4-NOT transcription complex subunit 4. (661 aa)
	A0A090N0D7	LD23303p. (1471 aa)
	A0A090L6L7	Speckle targeted PIP5K1A-regulated poly(A) polymerase. (851 aa)
	A0A090L754	U6 snRNA-associated Sm-like protein LSm1. (123 aa)
	A0A090L8B5	Poly(A)-specific ribonuclease PARN. (645 aa)
	A0A090L8J6	Exosome complex component RRP40. (237 aa)
	A0A090LAT3	CCR4-NOT transcription complex subunit 2. (359 aa)
	A0A090LAY2	Cell differentiation protein RCD1 homolog. (323 aa)
	A0A090LBT2	U6 snRNA-associated Sm-like protein LSm7. (108 aa)
	A0A090LC45	M7GpppX diphosphatase. (295 aa)
	A0A090LCP8	HBS1-like protein. (536 aa)
	A0A090LCS9	CCR4-NOT transcription complex subunit 3. (685 aa)
	A0A090LD31	Poly(A) RNA polymerase GLD2. (413 aa)
	A0A090LDG9	annotation not available (637 aa)
	A0A090LF64	Poly(A) RNA polymerase GLD2. (428 aa)
	A0A090LFD3	WD40/YVTN repeat-like-containing domain and WD40-repeat-containing domain-containing protein. (369 aa)
	A0A090LFF9	Exosome complex component RRP41. (258 aa)
	A0A090LFH3	Tim10/DDP family zinc finger domain-containing protein. (87 aa)
	A0A090LFU2	LD24721p. (1779 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
	A0A090LHA9	Poly(A) RNA polymerase GLD2. (1182 aa)
	A0A090LI33	M7GpppN-mRNA hydrolase. (163 aa)
	A0A090LJ05	PAB-dependent poly(A)-specific ribonuclease subunit PAN3. (598 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090KZK0	A0A090L2S2	A0A090KZK0	A0A090L2S2	Uncharacterized protein.	UPF0692 protein C19orf54.	0.900
A0A090KZK0	A0A090L428	A0A090KZK0	A0A090L428	Uncharacterized protein.	Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family.	0.701
A0A090KZK0	A0A090L5P9	A0A090KZK0	A0A090L5P9	Uncharacterized protein.	CCR4-NOT transcription complex subunit 4.	0.852
A0A090KZK0	A0A090L754	A0A090KZK0	A0A090L754	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1.	0.915
A0A090KZK0	A0A090LAT3	A0A090KZK0	A0A090LAT3	Uncharacterized protein.	CCR4-NOT transcription complex subunit 2.	0.794
A0A090KZK0	A0A090LBT2	A0A090KZK0	A0A090LBT2	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm7.	0.959
A0A090KZK0	A0A090LCS9	A0A090KZK0	A0A090LCS9	Uncharacterized protein.	CCR4-NOT transcription complex subunit 3.	0.889
A0A090KZK0	A0A090LI33	A0A090KZK0	A0A090LI33	Uncharacterized protein.	M7GpppN-mRNA hydrolase.	0.913
A0A090KZK0	A0A090LJ31	A0A090KZK0	A0A090LJ31	Uncharacterized protein.	Decapping protein 1.	0.927
A0A090KZK0	A0A090LJM6	A0A090KZK0	A0A090LJM6	Uncharacterized protein.	CCR4-NOT transcription complex subunit 1.	0.817
A0A090KZK0	A0A090LJP5	A0A090KZK0	A0A090LJP5	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2.	0.955
A0A090KZK0	A0A090LL84	A0A090KZK0	A0A090LL84	Uncharacterized protein.	WD40/YVTN repeat-like-containing domain and WD40-repeat-containing domain-containing protein.	0.916
A0A090KZK0	A0A090LNP8	A0A090KZK0	A0A090LNP8	Uncharacterized protein.	M7GpppN-mRNA hydrolase.	0.913
A0A090KZK0	A0A090LNT1	A0A090KZK0	A0A090LNT1	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.593
A0A090KZK0	A0A090MWW1	A0A090KZK0	A0A090MWW1	Uncharacterized protein.	Probable ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.	0.964
A0A090KZK0	A0A090MXZ6	A0A090KZK0	A0A090MXZ6	Uncharacterized protein.	Pop2.	0.896
A0A090KZK0	A0A090MY90	A0A090KZK0	A0A090MY90	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.942
A0A090KZK0	A0A090MYC8	A0A090KZK0	A0A090MYC8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1.	0.915
A0A090KZK0	LSM3	A0A090KZK0	A0A090LPD9	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.900
A0A090KZK0	LSM4	A0A090KZK0	A0A090LG17	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.949