92 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LJJ1	Ubiquitin-60S ribosomal protein L40. (116 aa)
	A0A090LJR9	Chromodomain-helicase-DNA-binding protein 4. (1763 aa)
	A0A090LKC1	Casein kinase 2 alpha 1; Belongs to the protein kinase superfamily. (347 aa)
	A0A090LKP9	Ubiquitin-60S ribosomal protein L40. (128 aa)
	A0A090LKS8	Polyubiquitin-C. (610 aa)
	A0A090LL18	DNA repair protein RAD50. (1254 aa)
	A0A090LLJ6	Bromo domain-containing protein. (636 aa)
	A0A090LLW7	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (300 aa)
	A0A090LM83	Belongs to the protein kinase superfamily. (283 aa)
	A0A090LM92	Transcription initiation factor TFIID subunit 10. (134 aa)
	A0A090LMI8	annotation not available (508 aa)
	A0A090LMW6	Transcription initiation factor TFIID subunit 6. (451 aa)
	A0A090LNA9	RE01471p. (334 aa)
	A0A090LP62	Transcription initiation factor TFIID domain and Histone-fold domain-containing protein. (422 aa)
	A0A090LPN4	Non-specific serine/threonine protein kinase. (580 aa)
	A0A090LS36	ShKT domain-containing protein. (237 aa)
	A0A090LTH3	Uncharacterized protein. (508 aa)
	A0A090MUM5	Alicorn. (298 aa)
	A0A090MV84	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (771 aa)
	A0A090MVV2	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (221 aa)
	A0A090MVV4	G9a. (270 aa)
	A0A090MWM2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein. (145 aa)
	A0A090MX02	Uncharacterized protein. (212 aa)
	A0A090MX40	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein. (556 aa)
	A0A090MX91	TP53-regulating kinase. (250 aa)
	A0A090MXM0	TATA box-binding protein-like protein 1. (207 aa)
	A0A090MXV4	Zinc finger, NHR/GATA-type domain-containing protein. (787 aa)
	A0A090MYC7	annotation not available (962 aa)
	A0A090MYN5	Replication factor C subunit 3. (358 aa)
	A0A090MYQ9	FACT complex subunit SPT16. (1034 aa)
	A0A090MYR9	RMI1_N domain-containing protein. (847 aa)
	A0A090MYW4	Exonuclease 1. (530 aa)
	A0A090MYX3	Replication protein A 70 kDa DNA-binding subunit. (609 aa)
	A0A090MZ03	annotation not available (794 aa)
	A0A090MZ26	Transcription initiation factor TFIID subunit 9. (266 aa)
	A0A090MZF2	Transcription initiation factor TFIID subunit 2. (1016 aa)
	A0A090N049	SAP domain-containing protein. (338 aa)
	A0A090N0K8	Ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family. (1396 aa)
	A0A090N0M1	Homeodomain interacting protein kinase. (969 aa)
	A0A090N0N2	Uncharacterized protein. (1301 aa)
	A0A090LEY3	Transcription initiation factor TFIID subunit 1. (1603 aa)
	A0A090LEI3	RMI1_N domain-containing protein. (491 aa)
	A0A090LEC5	Transcription initiation factor TFIID subunit 3. (950 aa)
	A0A090LDU2	G9a. (250 aa)
	A0A090LDS3	DNA replication ATP-dependent helicase/nuclease DNA2. (1032 aa)
	A0A090LDJ2	DNA repair protein RAD50. (1309 aa)
	A0A090LDF6	Replication factor C subunit 5. (340 aa)
	A0A090LDE5	Stress-activated map kinase interacting 1 family-containing protein. (573 aa)
	A0A090LD34	annotation not available (297 aa)
	A0A090LCN1	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (781 aa)
	A0A090LC49	Phosphatidylinositol 5-phosphate 4-kinase. (407 aa)
	A0A090LC01	Ubiquitin-40S ribosomal protein S27a. (164 aa)
	A0A090LBJ3	TBP-related factor. (327 aa)
	A0A090LBB0	Cdk5 activator-like protein. (471 aa)
	A0A090LA91	DNA topoisomerase 2-binding protein 1. (891 aa)
	A0A090LA53	Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P). (316 aa)
	A0A090LA04	Bloom syndrome protein. (1520 aa)
	A0A090L9X2	Bloom syndrome protein. (1034 aa)
	A0A090L9I6	RMI1_N domain-containing protein. (593 aa)
	A0A090L9A7	Double-strand break repair protein MRE11A; Belongs to the MRE11/RAD32 family. (541 aa)
	A0A090L8P6	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (199 aa)
	A0A090L853	Histone-lysine N-methyltransferase. (334 aa)
	A0A090L7Q2	Serine/threonine-protein kinase Chk1. (511 aa)
	A0A090L7N9	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L. (639 aa)
	A0A090L7F1	Tetratricopeptide repeat protein 5. (415 aa)
	A0A090L784	Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family. (2555 aa)
	A0A090L696	Serine/threonine-protein phosphatase. (328 aa)
	A0A090L628	Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily. (471 aa)
	A0A090L5U8	Guanylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (2876 aa)
	A0A090L5K9	Transcription initiation factor TFIID subunit 7. (216 aa)
	A0A090L5A0	Replication factor C subunit 2. (329 aa)
	A0A090L4P1	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha. (596 aa)
	A0A090L4D4	Target of rapamycin complex subunit LST8. (369 aa)
	A0A090L426	Serine/threonine-protein kinase STK11. (523 aa)
	A0A090L418	Transcription initiation factor TFIID subunit 4. (474 aa)
	A0A090L3Q3	SET domain and Post-SET domain-containing protein. (399 aa)
	A0A090L377	Aurora kinase B; Belongs to the protein kinase superfamily. (295 aa)
	A0A090L2G5	annotation not available (1634 aa)
	A0A090L2G4	Nucleolar complex protein 2 homolog. (602 aa)
	A0A090L0Z6	Peptidyl-prolyl cis-trans isomerase. (175 aa)
	A0A090L0Z0	Replication factor C subunit 4. (362 aa)
	A0A090KYR3	Bloom syndrome protein. (735 aa)
	A0A090KXJ2	annotation not available (369 aa)
	A0A090LFA1	Belongs to the protein kinase superfamily. (308 aa)
	A0A090LFD5	Transcription initiation factor TFIID subunit 11. (343 aa)
	A0A090LFM6	IP17340p. (578 aa)
	A0A090LGM9	POU domain protein. (463 aa)
	A0A090LGQ8	DNA repair protein Sae2/CtIP family-containing protein. (320 aa)
	A0A090LH17	annotation not available (375 aa)
	A0A090LHI5	Histone-binding protein RBBP7. (426 aa)
	A0A090LJE6	PR domain zinc finger protein 1. (823 aa)
	A0A090LJF2	Non-specific serine/threonine protein kinase. (598 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KXJ2	A0A090L4D4	annotation not available	Target of rapamycin complex subunit LST8.	0.629
A0A090KXJ2	A0A090LFM6	annotation not available	IP17340p.	0.881
A0A090KXJ2	A0A090LJF2	annotation not available	Non-specific serine/threonine protein kinase.	0.874
A0A090KXJ2	A0A090LPN4	annotation not available	Non-specific serine/threonine protein kinase.	0.746
A0A090KXJ2	A0A090MUM5	annotation not available	Alicorn.	0.895
A0A090KYR3	A0A090L0Z0	Bloom syndrome protein.	Replication factor C subunit 4.	0.753
A0A090KYR3	A0A090L5A0	Bloom syndrome protein.	Replication factor C subunit 2.	0.729
A0A090KYR3	A0A090L5U8	Bloom syndrome protein.	Guanylate cyclase; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.430
A0A090KYR3	A0A090L628	Bloom syndrome protein.	Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily.	0.768
A0A090KYR3	A0A090L784	Bloom syndrome protein.	Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.	0.889
A0A090KYR3	A0A090L7Q2	Bloom syndrome protein.	Serine/threonine-protein kinase Chk1.	0.768
A0A090KYR3	A0A090L9A7	Bloom syndrome protein.	Double-strand break repair protein MRE11A; Belongs to the MRE11/RAD32 family.	0.881
A0A090KYR3	A0A090L9I6	Bloom syndrome protein.	RMI1_N domain-containing protein.	0.800
A0A090KYR3	A0A090LA91	Bloom syndrome protein.	DNA topoisomerase 2-binding protein 1.	0.781
A0A090KYR3	A0A090LC01	Bloom syndrome protein.	Ubiquitin-40S ribosomal protein S27a.	0.555
A0A090KYR3	A0A090LCN1	Bloom syndrome protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.916
A0A090KYR3	A0A090LDF6	Bloom syndrome protein.	Replication factor C subunit 5.	0.733
A0A090KYR3	A0A090LDJ2	Bloom syndrome protein.	DNA repair protein RAD50.	0.772
A0A090KYR3	A0A090LDS3	Bloom syndrome protein.	DNA replication ATP-dependent helicase/nuclease DNA2.	0.874
A0A090KYR3	A0A090LEI3	Bloom syndrome protein.	RMI1_N domain-containing protein.	0.800