21 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	A0A090L9I6	RMI1_N domain-containing protein. (593 aa)
	A0A090L9X2	Bloom syndrome protein. (1034 aa)
	A0A090LA04	Bloom syndrome protein. (1520 aa)
	A0A090LB94	Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family. (294 aa)
	A0A090LCN1	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (781 aa)
	A0A090LDB3	BTB/POZ fold domain-containing protein. (786 aa)
	A0A090LDJ2	DNA repair protein RAD50. (1309 aa)
	A0A090LDS3	DNA replication ATP-dependent helicase/nuclease DNA2. (1032 aa)
	A0A090LEI3	RMI1_N domain-containing protein. (491 aa)
	A0A090LFA8	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (382 aa)
	A0A090LGQ8	DNA repair protein Sae2/CtIP family-containing protein. (320 aa)
	A0A090LJZ0	DNA repair protein Rad51 homolog; Belongs to the RecA family. (333 aa)
	A0A090LL18	DNA repair protein RAD50. (1254 aa)
	A0A090MV84	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (771 aa)
	A0A090MX02	Uncharacterized protein. (212 aa)
	A0A090MY01	Crossover junction endonuclease MUS81. (462 aa)
	A0A090MYR9	RMI1_N domain-containing protein. (847 aa)
	A0A090MYW4	Exonuclease 1. (530 aa)
	A0A090KYR3	Bloom syndrome protein. (735 aa)
	A0A090L7X6	Asparaginyl-tRNA synthetase. (549 aa)
	A0A090L9A7	Double-strand break repair protein MRE11A; Belongs to the MRE11/RAD32 family. (541 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KYR3	A0A090L7X6	Bloom syndrome protein.	Asparaginyl-tRNA synthetase.	0.583
A0A090KYR3	A0A090L9A7	Bloom syndrome protein.	Double-strand break repair protein MRE11A; Belongs to the MRE11/RAD32 family.	0.881
A0A090KYR3	A0A090L9I6	Bloom syndrome protein.	RMI1_N domain-containing protein.	0.800
A0A090KYR3	A0A090LB94	Bloom syndrome protein.	Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family.	0.818
A0A090KYR3	A0A090LCN1	Bloom syndrome protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.916
A0A090KYR3	A0A090LDB3	Bloom syndrome protein.	BTB/POZ fold domain-containing protein.	0.583
A0A090KYR3	A0A090LDJ2	Bloom syndrome protein.	DNA repair protein RAD50.	0.772
A0A090KYR3	A0A090LDS3	Bloom syndrome protein.	DNA replication ATP-dependent helicase/nuclease DNA2.	0.874
A0A090KYR3	A0A090LEI3	Bloom syndrome protein.	RMI1_N domain-containing protein.	0.800
A0A090KYR3	A0A090LFA8	Bloom syndrome protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.828
A0A090KYR3	A0A090LGQ8	Bloom syndrome protein.	DNA repair protein Sae2/CtIP family-containing protein.	0.764
A0A090KYR3	A0A090LJZ0	Bloom syndrome protein.	DNA repair protein Rad51 homolog; Belongs to the RecA family.	0.828
A0A090KYR3	A0A090LL18	Bloom syndrome protein.	DNA repair protein RAD50.	0.772
A0A090KYR3	A0A090MY01	Bloom syndrome protein.	Crossover junction endonuclease MUS81.	0.871
A0A090KYR3	A0A090MYR9	Bloom syndrome protein.	RMI1_N domain-containing protein.	0.799
A0A090KYR3	A0A090MYW4	Bloom syndrome protein.	Exonuclease 1.	0.923
A0A090L7X6	A0A090KYR3	Asparaginyl-tRNA synthetase.	Bloom syndrome protein.	0.583
A0A090L7X6	A0A090L9A7	Asparaginyl-tRNA synthetase.	Double-strand break repair protein MRE11A; Belongs to the MRE11/RAD32 family.	0.652
A0A090L7X6	A0A090L9I6	Asparaginyl-tRNA synthetase.	RMI1_N domain-containing protein.	0.527
A0A090L7X6	A0A090L9X2	Asparaginyl-tRNA synthetase.	Bloom syndrome protein.	0.583