20 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090LDI2	COP9 signalosome complex subunit 2. (444 aa)
	A0A090LDF2	COP9 signalosome complex subunit 5. (393 aa)
	A0A090LD92	DNA damage-binding protein 1. (1141 aa)
	A0A090LC01	Ubiquitin-40S ribosomal protein S27a. (164 aa)
	A0A090LBZ6	INO80 complex subunit D. (1293 aa)
	A0A090LAI7	E3 ubiquitin-protein ligase RBX1. (108 aa)
	A0A090L7G6	annotation not available (465 aa)
	A0A090LJJ1	Ubiquitin-60S ribosomal protein L40. (116 aa)
	A0A090LJ42	Uncharacterized protein. (338 aa)
	A0A090LHM4	DNA repair protein complementing XP-C cells. (559 aa)
	A0A090LG33	Microspherule protein 1. (369 aa)
	A0A090L5Z5	Poly [ADP-ribose] polymerase 1. (456 aa)
	A0A090LLE5	Uncharacterized protein. (314 aa)
	A0A090LLA6	Poly [ADP-ribose] polymerase. (729 aa)
	A0A090LKS8	Polyubiquitin-C. (610 aa)
	A0A090LKP9	Ubiquitin-60S ribosomal protein L40. (128 aa)
	A0A090MYX0	Cullin-4A; Belongs to the cullin family. (883 aa)
	A0A090MV00	RuvB-like helicase; Belongs to the RuvB family. (655 aa)
	A0A090MUR1	Poly [ADP-ribose] polymerase 2. (538 aa)
	A0A090LS36	ShKT domain-containing protein. (237 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090L5Z5	A0A090L7G6	Poly [ADP-ribose] polymerase 1.	annotation not available	0.657
A0A090L5Z5	A0A090LC01	Poly [ADP-ribose] polymerase 1.	Ubiquitin-40S ribosomal protein S27a.	0.657
A0A090L5Z5	A0A090LD92	Poly [ADP-ribose] polymerase 1.	DNA damage-binding protein 1.	0.629
A0A090L5Z5	A0A090LHM4	Poly [ADP-ribose] polymerase 1.	DNA repair protein complementing XP-C cells.	0.787
A0A090L5Z5	A0A090LKS8	Poly [ADP-ribose] polymerase 1.	Polyubiquitin-C.	0.629
A0A090L5Z5	A0A090MYX0	Poly [ADP-ribose] polymerase 1.	Cullin-4A; Belongs to the cullin family.	0.666
A0A090L7G6	A0A090L5Z5	annotation not available	Poly [ADP-ribose] polymerase 1.	0.657
A0A090L7G6	A0A090LAI7	annotation not available	E3 ubiquitin-protein ligase RBX1.	0.819
A0A090L7G6	A0A090LBZ6	annotation not available	INO80 complex subunit D.	0.626
A0A090L7G6	A0A090LC01	annotation not available	Ubiquitin-40S ribosomal protein S27a.	0.940
A0A090L7G6	A0A090LD92	annotation not available	DNA damage-binding protein 1.	0.917
A0A090L7G6	A0A090LDF2	annotation not available	COP9 signalosome complex subunit 5.	0.839
A0A090L7G6	A0A090LDI2	annotation not available	COP9 signalosome complex subunit 2.	0.787
A0A090L7G6	A0A090LG33	annotation not available	Microspherule protein 1.	0.576
A0A090L7G6	A0A090LHM4	annotation not available	DNA repair protein complementing XP-C cells.	0.999
A0A090L7G6	A0A090LJ42	annotation not available	Uncharacterized protein.	0.731
A0A090L7G6	A0A090LJJ1	annotation not available	Ubiquitin-60S ribosomal protein L40.	0.925
A0A090L7G6	A0A090LKP9	annotation not available	Ubiquitin-60S ribosomal protein L40.	0.925
A0A090L7G6	A0A090LKS8	annotation not available	Polyubiquitin-C.	0.989
A0A090L7G6	A0A090LLA6	annotation not available	Poly [ADP-ribose] polymerase.	0.657