14 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090L5Q8	GH10531p. (512 aa)
	A0A090L5Q1	GH10531p. (584 aa)
	A0A090L5K1	Uncharacterized protein. (466 aa)
	A0A090L509	Uncharacterized protein. (514 aa)
	A0A090KXE6	Uncharacterized protein. (472 aa)
	A0A090MZC4	Uncharacterized protein. (419 aa)
	A0A090MXW0	Uncharacterized protein. (544 aa)
	A0A090LE10	Uncharacterized protein. (477 aa)
	A0A090LC70	GH10531p. (552 aa)
	A0A090LAH6	Uncharacterized protein. (467 aa)
	A0A090LAE9	Uncharacterized protein. (628 aa)
	A0A090L8T3	Uncharacterized protein. (579 aa)
	A0A090L6G7	Uncharacterized protein. (653 aa)
	A0A090L5X5	GH10531p. (714 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KXE6	A0A090L5K1	Uncharacterized protein.	Uncharacterized protein.	0.667
A0A090KXE6	A0A090L5Q1	Uncharacterized protein.	GH10531p.	0.658
A0A090KXE6	A0A090L5Q8	Uncharacterized protein.	GH10531p.	0.652
A0A090KXE6	A0A090L5X5	Uncharacterized protein.	GH10531p.	0.664
A0A090KXE6	A0A090L6G7	Uncharacterized protein.	Uncharacterized protein.	0.652
A0A090KXE6	A0A090LAE9	Uncharacterized protein.	Uncharacterized protein.	0.651
A0A090KXE6	A0A090LAH6	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A090KXE6	A0A090LC70	Uncharacterized protein.	GH10531p.	0.652
A0A090KXE6	A0A090LE10	Uncharacterized protein.	Uncharacterized protein.	0.644
A0A090L509	A0A090L5K1	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A090L509	A0A090L5Q1	Uncharacterized protein.	GH10531p.	0.659
A0A090L509	A0A090L5Q8	Uncharacterized protein.	GH10531p.	0.651
A0A090L509	A0A090L5X5	Uncharacterized protein.	GH10531p.	0.658
A0A090L509	A0A090L6G7	Uncharacterized protein.	Uncharacterized protein.	0.647
A0A090L509	A0A090LAE9	Uncharacterized protein.	Uncharacterized protein.	0.646
A0A090L509	A0A090LAH6	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A090L509	A0A090LC70	Uncharacterized protein.	GH10531p.	0.655
A0A090L509	A0A090LE10	Uncharacterized protein.	Uncharacterized protein.	0.639
A0A090L5K1	A0A090KXE6	Uncharacterized protein.	Uncharacterized protein.	0.667
A0A090L5K1	A0A090L509	Uncharacterized protein.	Uncharacterized protein.	0.648