37 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090KYR3	Bloom syndrome protein. (735 aa)
	A0A090L0Z0	Replication factor C subunit 4. (362 aa)
	A0A090L5A0	Replication factor C subunit 2. (329 aa)
	A0A090L628	Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily. (471 aa)
	A0A090LLE0	14-3-3 protein zeta; Belongs to the 14-3-3 family. (245 aa)
	A0A090L6A0	Histone H2B family and Histone core domain and Histone-fold domain-containing protein; Belongs to the histone H2B family. (910 aa)
	A0A090L784	Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family. (2555 aa)
	A0A090L7Q2	Serine/threonine-protein kinase Chk1. (511 aa)
	A0A090L9A7	Double-strand break repair protein MRE11A; Belongs to the MRE11/RAD32 family. (541 aa)
	A0A090N049	SAP domain-containing protein. (338 aa)
	A0A090MYX3	Replication protein A 70 kDa DNA-binding subunit. (609 aa)
	A0A090MYW4	Exonuclease 1. (530 aa)
	A0A090MYR9	RMI1_N domain-containing protein. (847 aa)
	A0A090MYN5	Replication factor C subunit 3. (358 aa)
	A0A090MX40	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein. (556 aa)
	A0A090MX02	Uncharacterized protein. (212 aa)
	A0A090MVG1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A090MV84	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (771 aa)
	A0A090MV81	Histone H2B; Belongs to the histone H2B family. (123 aa)
	A0A090MUJ4	Histone H2B; Belongs to the histone H2B family. (123 aa)
	A0A090LNA9	RE01471p. (334 aa)
	A0A090LN87	14-3-3 protein zeta; Belongs to the 14-3-3 family. (300 aa)
	A0A090LHS8	Uncharacterized protein. (647 aa)
	A0A090LL18	DNA repair protein RAD50. (1254 aa)
	A0A090L9I6	RMI1_N domain-containing protein. (593 aa)
	A0A090L9U7	Histone H2B; Belongs to the histone H2B family. (123 aa)
	A0A090L9X2	Bloom syndrome protein. (1034 aa)
	A0A090LA04	Bloom syndrome protein. (1520 aa)
	A0A090LA91	DNA topoisomerase 2-binding protein 1. (891 aa)
	A0A090LAH9	Histone H2B; Belongs to the histone H2B family. (123 aa)
	A0A090LCN1	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (781 aa)
	A0A090LD40	Histone H2B; Belongs to the histone H2B family. (123 aa)
	A0A090LDF6	Replication factor C subunit 5. (340 aa)
	A0A090LDJ2	DNA repair protein RAD50. (1309 aa)
	A0A090LDS3	DNA replication ATP-dependent helicase/nuclease DNA2. (1032 aa)
	A0A090LEI3	RMI1_N domain-containing protein. (491 aa)
	A0A090LGQ8	DNA repair protein Sae2/CtIP family-containing protein. (320 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KYR3	A0A090L0Z0	Bloom syndrome protein.	Replication factor C subunit 4.	0.753
A0A090KYR3	A0A090L5A0	Bloom syndrome protein.	Replication factor C subunit 2.	0.729
A0A090KYR3	A0A090L628	Bloom syndrome protein.	Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily.	0.768
A0A090KYR3	A0A090L784	Bloom syndrome protein.	Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.	0.889
A0A090KYR3	A0A090L7Q2	Bloom syndrome protein.	Serine/threonine-protein kinase Chk1.	0.768
A0A090KYR3	A0A090L9A7	Bloom syndrome protein.	Double-strand break repair protein MRE11A; Belongs to the MRE11/RAD32 family.	0.881
A0A090KYR3	A0A090L9I6	Bloom syndrome protein.	RMI1_N domain-containing protein.	0.800
A0A090KYR3	A0A090LA91	Bloom syndrome protein.	DNA topoisomerase 2-binding protein 1.	0.781
A0A090KYR3	A0A090LCN1	Bloom syndrome protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.916
A0A090KYR3	A0A090LDF6	Bloom syndrome protein.	Replication factor C subunit 5.	0.733
A0A090KYR3	A0A090LDJ2	Bloom syndrome protein.	DNA repair protein RAD50.	0.772
A0A090KYR3	A0A090LDS3	Bloom syndrome protein.	DNA replication ATP-dependent helicase/nuclease DNA2.	0.874
A0A090KYR3	A0A090LEI3	Bloom syndrome protein.	RMI1_N domain-containing protein.	0.800
A0A090KYR3	A0A090LGQ8	Bloom syndrome protein.	DNA repair protein Sae2/CtIP family-containing protein.	0.764
A0A090KYR3	A0A090LHS8	Bloom syndrome protein.	Uncharacterized protein.	0.734
A0A090KYR3	A0A090LL18	Bloom syndrome protein.	DNA repair protein RAD50.	0.772
A0A090KYR3	A0A090LNA9	Bloom syndrome protein.	RE01471p.	0.767
A0A090KYR3	A0A090MX40	Bloom syndrome protein.	P-loop containing Nucleoside triphosphate hydrolase domain-containing protein.	0.836
A0A090KYR3	A0A090MYN5	Bloom syndrome protein.	Replication factor C subunit 3.	0.717
A0A090KYR3	A0A090MYR9	Bloom syndrome protein.	RMI1_N domain-containing protein.	0.799