48 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090N082	Numb-associated kinase. (1127 aa)
	A0A090N0N0	NECAP-like protein CG9132. (188 aa)
	A0A090N0X5	AP-50; Belongs to the adaptor complexes medium subunit family. (416 aa)
	A0A090KWG7	Protein stoned-B. (1573 aa)
	A0A090L010	FCH domain and SH3 domain-containing protein. (596 aa)
	A0A090LAG6	Phosphatidylinositol-binding clathrin assembly protein. (899 aa)
	A0A090LBB5	Belongs to the G-protein coupled receptor 1 family. (804 aa)
	A0A090LBH3	Multiple C2 domain and transmembrane region protein. (945 aa)
	A0A090LBI1	Uncharacterized protein. (472 aa)
	A0A090LC01	Ubiquitin-40S ribosomal protein S27a. (164 aa)
	A0A090LC88	GH11189p. (748 aa)
	A0A090LC98	Synaptobrevin domain-containing protein. (111 aa)
	A0A090LCM3	Actin-related protein 3; Belongs to the actin family. (406 aa)
	A0A090LDB1	Uncharacterized protein. (1091 aa)
	A0A090LDF2	COP9 signalosome complex subunit 5. (393 aa)
	A0A090L0Y7	annotation not available (111 aa)
	A0A090L3Q9	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1692 aa)
	A0A090L4C2	Hepatocyte growth factor-regulated tyrosine kinase substrate. (377 aa)
	A0A090L4Y9	SH3 domain and BAR domain and Arfaptin homology (AH) domain/BAR domain-containing protein. (392 aa)
	A0A090L649	Reps. (582 aa)
	A0A090L894	WASp. (434 aa)
	A0A090L8N1	NEDD8. (118 aa)
	A0A090L926	Actin-related protein 2/3 complex subunit 4; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament; Belongs to the ARPC4 family. (172 aa)
	A0A090LDI2	COP9 signalosome complex subunit 2. (444 aa)
	A0A090LE33	Actin-related protein 2/3 complex subunit 5; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. (154 aa)
	A0A090LF18	Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (306 aa)
	A0A090LGK3	Huntingtin interacting protein 1. (915 aa)
	A0A090LH60	DUF148 domain-containing protein. (170 aa)
	A0A090LHB7	Torsin-like protein. (346 aa)
	A0A090LHG4	BcDNA.GH03163. (536 aa)
	A0A090LJJ1	Ubiquitin-60S ribosomal protein L40. (116 aa)
	A0A090LKE0	Clathrin heavy chain. (946 aa)
	A0A090LKP9	Ubiquitin-60S ribosomal protein L40. (128 aa)
	A0A090LKS8	Polyubiquitin-C. (610 aa)
	A0A090LLE5	Uncharacterized protein. (314 aa)
	A0A090LLG0	Dopamine/Ecdysteroid receptor. (325 aa)
	A0A090LMH2	FCH domain and SH3 domain-containing protein. (611 aa)
	A0A090LML1	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (939 aa)
	A0A090LN99	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (229 aa)
	A0A090LR06	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament. (394 aa)
	A0A090LS17	Jak pathway signal transduction adaptor molecule. (514 aa)
	A0A090LS36	ShKT domain-containing protein. (237 aa)
	A0A090LSC5	Protein disabled. (518 aa)
	A0A090MWT9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	A0A090MXI3	Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (182 aa)
	A0A090MYG1	Drab5. (331 aa)
	A0A090MZD9	Pleckstrin homology-like domain-containing protein. (474 aa)
	A0A090MZK0	Drongo. (465 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A090KWG7	A0A090L0Y7	Protein stoned-B.	annotation not available	0.731
A0A090KWG7	A0A090L3Q9	Protein stoned-B.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.688
A0A090KWG7	A0A090L4Y9	Protein stoned-B.	SH3 domain and BAR domain and Arfaptin homology (AH) domain/BAR domain-containing protein.	0.729
A0A090KWG7	A0A090L649	Protein stoned-B.	Reps.	0.757
A0A090KWG7	A0A090L8N1	Protein stoned-B.	NEDD8.	0.835
A0A090KWG7	A0A090LAG6	Protein stoned-B.	Phosphatidylinositol-binding clathrin assembly protein.	0.836
A0A090KWG7	A0A090LBB5	Protein stoned-B.	Belongs to the G-protein coupled receptor 1 family.	0.607
A0A090KWG7	A0A090LBH3	Protein stoned-B.	Multiple C2 domain and transmembrane region protein.	0.601
A0A090KWG7	A0A090LBI1	Protein stoned-B.	Uncharacterized protein.	0.687
A0A090KWG7	A0A090LC01	Protein stoned-B.	Ubiquitin-40S ribosomal protein S27a.	0.689
A0A090KWG7	A0A090LC98	Protein stoned-B.	Synaptobrevin domain-containing protein.	0.676
A0A090KWG7	A0A090LDB1	Protein stoned-B.	Uncharacterized protein.	0.638
A0A090KWG7	A0A090LH60	Protein stoned-B.	DUF148 domain-containing protein.	0.638
A0A090KWG7	A0A090LHB7	Protein stoned-B.	Torsin-like protein.	0.717
A0A090KWG7	A0A090LHG4	Protein stoned-B.	BcDNA.GH03163.	0.647
A0A090KWG7	A0A090LKE0	Protein stoned-B.	Clathrin heavy chain.	0.688
A0A090KWG7	A0A090LKS8	Protein stoned-B.	Polyubiquitin-C.	0.707
A0A090KWG7	A0A090LML1	Protein stoned-B.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.735
A0A090KWG7	A0A090LN99	Protein stoned-B.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.732
A0A090KWG7	A0A090LSC5	Protein stoned-B.	Protein disabled.	0.807