13 items (Strongyloides ratti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

gene neighborhood

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Your Input:
	A0A090MY90	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (81 aa)
	A0A090LFU9	Small nuclear ribonucleoprotein-associated protein B. (192 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (134 aa)
	A0A090LBT2	U6 snRNA-associated Sm-like protein LSm7. (108 aa)
	A0A090LGT9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (118 aa)
	A0A090LI89	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
	A0A090LJP5	U6 snRNA-associated Sm-like protein LSm2. (428 aa)
	A0A090LDE1	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	A0A090LEK5	Small nuclear ribonucleoprotein G. (77 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	A0A090L391	tRNA methyltransferase 10 homolog A. (373 aa)
	A0A090L339	Small nuclear ribonucleoprotein Sm D2. (116 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)

Your Current Organism:

Strongyloides ratti

NCBI taxonomy Id: 34506
Other names: S. ratti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090L339	A0A090LBT2	A0A090L339	A0A090LBT2	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm7.	0.997
A0A090L339	A0A090LDE1	A0A090L339	A0A090LDE1	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D3.	0.999
A0A090L339	A0A090LEK5	A0A090L339	A0A090LEK5	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
A0A090L339	A0A090LFU9	A0A090L339	A0A090LFU9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein-associated protein B.	0.999
A0A090L339	A0A090LGT9	A0A090L339	A0A090LGT9	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
A0A090L339	A0A090LI89	A0A090L339	A0A090LI89	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
A0A090L339	A0A090LJP5	A0A090L339	A0A090LJP5	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm2.	0.999
A0A090L339	A0A090MY90	A0A090L339	A0A090MY90	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
A0A090L339	LSM3	A0A090L339	A0A090LPD9	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.983
A0A090L339	LSM4	A0A090L339	A0A090LG17	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
A0A090L339	LSM8	A0A090L339	A0A090N0A3	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.994
A0A090LBT2	A0A090L339	A0A090LBT2	A0A090L339	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein Sm D2.	0.997
A0A090LBT2	A0A090LDE1	A0A090LBT2	A0A090LDE1	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein Sm D3.	0.998
A0A090LBT2	A0A090LEK5	A0A090LBT2	A0A090LEK5	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein G.	0.971
A0A090LBT2	A0A090LFU9	A0A090LBT2	A0A090LFU9	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein-associated protein B.	0.981
A0A090LBT2	A0A090LGT9	A0A090LBT2	A0A090LGT9	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.987
A0A090LBT2	A0A090LI89	A0A090LBT2	A0A090LI89	U6 snRNA-associated Sm-like protein LSm7.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.948
A0A090LBT2	A0A090LJP5	A0A090LBT2	A0A090LJP5	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm2.	0.999
A0A090LBT2	A0A090MY90	A0A090LBT2	A0A090MY90	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A090LBT2	LSM3	A0A090LBT2	A0A090LPD9	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.988