(6 nodes) Alkaline ceramidase, plant, and Lipid kinase activity network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_039100	Uncharacterized protein. (255 aa)
	C5167_039353	DAGKc domain-containing protein. (492 aa)
	C5167_007049	Uncharacterized protein. (546 aa)
	C5167_009480	Uncharacterized protein. (255 aa)
	C5167_049928	DAGKc domain-containing protein. (766 aa)
	C5167_047019	Uncharacterized protein. (430 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_007049	C5167_039353	A0A4Y7JJA0	A0A4Y7IFE3	Uncharacterized protein.	DAGKc domain-containing protein.	0.965
C5167_007049	C5167_049928	A0A4Y7JJA0	A0A4Y7KQN1	Uncharacterized protein.	DAGKc domain-containing protein.	0.536
C5167_009480	C5167_039353	A0A4Y7K1H5	A0A4Y7IFE3	Uncharacterized protein.	DAGKc domain-containing protein.	0.942
C5167_009480	C5167_047019	A0A4Y7K1H5	A0A4Y7LIB4	Uncharacterized protein.	Uncharacterized protein.	0.473
C5167_009480	C5167_049928	A0A4Y7K1H5	A0A4Y7KQN1	Uncharacterized protein.	DAGKc domain-containing protein.	0.564
C5167_039100	C5167_039353	A0A4Y7IEM3	A0A4Y7IFE3	Uncharacterized protein.	DAGKc domain-containing protein.	0.942
C5167_039100	C5167_047019	A0A4Y7IEM3	A0A4Y7LIB4	Uncharacterized protein.	Uncharacterized protein.	0.473
C5167_039100	C5167_049928	A0A4Y7IEM3	A0A4Y7KQN1	Uncharacterized protein.	DAGKc domain-containing protein.	0.564
C5167_039353	C5167_007049	A0A4Y7IFE3	A0A4Y7JJA0	DAGKc domain-containing protein.	Uncharacterized protein.	0.965
C5167_039353	C5167_009480	A0A4Y7IFE3	A0A4Y7K1H5	DAGKc domain-containing protein.	Uncharacterized protein.	0.942
C5167_039353	C5167_039100	A0A4Y7IFE3	A0A4Y7IEM3	DAGKc domain-containing protein.	Uncharacterized protein.	0.942
C5167_039353	C5167_047019	A0A4Y7IFE3	A0A4Y7LIB4	DAGKc domain-containing protein.	Uncharacterized protein.	0.590
C5167_047019	C5167_009480	A0A4Y7LIB4	A0A4Y7K1H5	Uncharacterized protein.	Uncharacterized protein.	0.473
C5167_047019	C5167_039100	A0A4Y7LIB4	A0A4Y7IEM3	Uncharacterized protein.	Uncharacterized protein.	0.473
C5167_047019	C5167_039353	A0A4Y7LIB4	A0A4Y7IFE3	Uncharacterized protein.	DAGKc domain-containing protein.	0.590
C5167_047019	C5167_049928	A0A4Y7LIB4	A0A4Y7KQN1	Uncharacterized protein.	DAGKc domain-containing protein.	0.650
C5167_049928	C5167_007049	A0A4Y7KQN1	A0A4Y7JJA0	DAGKc domain-containing protein.	Uncharacterized protein.	0.536
C5167_049928	C5167_009480	A0A4Y7KQN1	A0A4Y7K1H5	DAGKc domain-containing protein.	Uncharacterized protein.	0.564
C5167_049928	C5167_039100	A0A4Y7KQN1	A0A4Y7IEM3	DAGKc domain-containing protein.	Uncharacterized protein.	0.564
C5167_049928	C5167_047019	A0A4Y7KQN1	A0A4Y7LIB4	DAGKc domain-containing protein.	Uncharacterized protein.	0.650