(34 nodes) TRAPP complex, and TRAPP II complex, Trs120 network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_038280	Uncharacterized protein. (78 aa)
	C5167_037717	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (142 aa)
	C5167_037914	Uncharacterized protein. (143 aa)
	C5167_039396	Foie-gras_1 domain-containing protein. (1287 aa)
	C5167_041118	Uncharacterized protein. (203 aa)
	C5167_017127	Uncharacterized protein. (1207 aa)
	C5167_018311	Uncharacterized protein. (191 aa)
	C5167_017696	TPR_REGION domain-containing protein. (376 aa)
	C5167_018312	Uncharacterized protein. (203 aa)
	C5167_020120	Uncharacterized protein. (160 aa)
	C5167_012786	Uncharacterized protein. (216 aa)
	C5167_012392	Uncharacterized protein. (408 aa)
	C5167_013176	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (186 aa)
	C5167_013419	Uncharacterized protein. (201 aa)
	C5167_014813	Uncharacterized protein. (122 aa)
	C5167_015591	Uncharacterized protein. (178 aa)
	C5167_023648	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily. (168 aa)
	C5167_008671	Uncharacterized protein. (97 aa)
	C5167_009081	Foie-gras_1 domain-containing protein. (1243 aa)
	C5167_009398	Uncharacterized protein. (90 aa)
	C5167_010454	Uncharacterized protein. (177 aa)
	C5167_009278	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (190 aa)
	C5167_010283	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (167 aa)
	C5167_033452	Uncharacterized protein. (401 aa)
	C5167_032343	Uncharacterized protein. (204 aa)
	C5167_032934	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (153 aa)
	C5167_034458	Uncharacterized protein. (264 aa)
	C5167_049216	Uncharacterized protein. (401 aa)
	C5167_049944	Uncharacterized protein. (199 aa)
	C5167_000836	Uncharacterized protein. (279 aa)
	C5167_002411	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (168 aa)
	C5167_002228	Uncharacterized protein. (1291 aa)
	C5167_045329	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (168 aa)
	C5167_045586	Uncharacterized protein. (1291 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_000836	C5167_002228	A0A4Y7KWN5	A0A4Y7KY83	Uncharacterized protein.	Uncharacterized protein.	0.980
C5167_000836	C5167_002411	A0A4Y7KWN5	A0A4Y7KY34	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.975
C5167_000836	C5167_008671	A0A4Y7KWN5	A0A4Y7JV67	Uncharacterized protein.	Uncharacterized protein.	0.980
C5167_000836	C5167_009081	A0A4Y7KWN5	A0A4Y7JZA0	Uncharacterized protein.	Foie-gras_1 domain-containing protein.	0.986
C5167_000836	C5167_009398	A0A4Y7KWN5	A0A4Y7K077	Uncharacterized protein.	Uncharacterized protein.	0.975
C5167_000836	C5167_010283	A0A4Y7KWN5	A0A4Y7K2L5	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.987
C5167_000836	C5167_010454	A0A4Y7KWN5	A0A4Y7K0B1	Uncharacterized protein.	Uncharacterized protein.	0.980
C5167_000836	C5167_012392	A0A4Y7KWN5	A0A4Y7J0F9	Uncharacterized protein.	Uncharacterized protein.	0.776
C5167_000836	C5167_012786	A0A4Y7KWN5	A0A4Y7IZA6	Uncharacterized protein.	Uncharacterized protein.	0.990
C5167_000836	C5167_013419	A0A4Y7KWN5	A0A4Y7J4A2	Uncharacterized protein.	Uncharacterized protein.	0.758
C5167_000836	C5167_014813	A0A4Y7KWN5	A0A4Y7J7Q9	Uncharacterized protein.	Uncharacterized protein.	0.971
C5167_000836	C5167_015591	A0A4Y7KWN5	A0A4Y7JAB2	Uncharacterized protein.	Uncharacterized protein.	0.971
C5167_000836	C5167_017127	A0A4Y7KWN5	A0A4Y7ILU4	Uncharacterized protein.	Uncharacterized protein.	0.989
C5167_000836	C5167_017696	A0A4Y7KWN5	A0A4Y7ING7	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.960
C5167_000836	C5167_018311	A0A4Y7KWN5	A0A4Y7ILX8	Uncharacterized protein.	Uncharacterized protein.	0.755
C5167_000836	C5167_018312	A0A4Y7KWN5	A0A4Y7IQC1	Uncharacterized protein.	Uncharacterized protein.	0.755
C5167_000836	C5167_020120	A0A4Y7KWN5	A0A4Y7IS41	Uncharacterized protein.	Uncharacterized protein.	0.755
C5167_000836	C5167_023648	A0A4Y7KWN5	A0A4Y7JQ20	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.	0.990
C5167_000836	C5167_032343	A0A4Y7KWN5	A0A4Y7KB73	Uncharacterized protein.	Uncharacterized protein.	0.755
C5167_000836	C5167_032934	A0A4Y7KWN5	A0A4Y7KBR8	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.975