(33 nodes) Prenylation, and Rab subfamily of small GTPases network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_036985	Uncharacterized protein. (243 aa)
	C5167_038171	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family. (445 aa)
	C5167_038939	Uncharacterized protein. (188 aa)
	C5167_019018	Uncharacterized protein. (219 aa)
	C5167_019017	Uncharacterized protein. (86 aa)
	C5167_020189	Uncharacterized protein. (387 aa)
	C5167_020444	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family. (461 aa)
	C5167_020599	Uncharacterized protein. (445 aa)
	C5167_013205	Uncharacterized protein. (715 aa)
	C5167_013420	Uncharacterized protein. (216 aa)
	C5167_014496	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family. (461 aa)
	C5167_015173	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family. (461 aa)
	C5167_024374	Uncharacterized protein. (216 aa)
	C5167_024526	Uncharacterized protein. (214 aa)
	C5167_025336	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (317 aa)
	C5167_008480	Uncharacterized protein. (207 aa)
	C5167_009529	Uncharacterized protein. (222 aa)
	C5167_010867	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family. (447 aa)
	C5167_033279	Uncharacterized protein. (432 aa)
	C5167_033738	Uncharacterized protein. (224 aa)
	C5167_033007	Uncharacterized protein. (242 aa)
	C5167_034517	Uncharacterized protein. (211 aa)
	C5167_035441	Uncharacterized protein. (86 aa)
	C5167_049684	Uncharacterized protein. (752 aa)
	C5167_050956	Uncharacterized protein. (241 aa)
	C5167_050869	Uncharacterized protein. (200 aa)
	C5167_001162	Uncharacterized protein. (258 aa)
	C5167_001334	Uncharacterized protein. (246 aa)
	C5167_001488	Uncharacterized protein. (201 aa)
	C5167_001444	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (317 aa)
	C5167_042811	Uncharacterized protein. (374 aa)
	C5167_043633	Uncharacterized protein. (206 aa)
	C5167_046783	Uncharacterized protein. (264 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001162	C5167_001444	A0A4Y7KVV2	A0A4Y7KZB9	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.447
C5167_001162	C5167_008480	A0A4Y7KVV2	A0A4Y7JXS2	Uncharacterized protein.	Uncharacterized protein.	0.543
C5167_001162	C5167_010867	A0A4Y7KVV2	A0A4Y7K4B1	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.767
C5167_001162	C5167_013205	A0A4Y7KVV2	A0A4Y7J0K1	Uncharacterized protein.	Uncharacterized protein.	0.552
C5167_001162	C5167_014496	A0A4Y7KVV2	A0A4Y7J5B2	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.767
C5167_001162	C5167_015173	A0A4Y7KVV2	A0A4Y7J8D8	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.779
C5167_001162	C5167_019017	A0A4Y7KVV2	A0A4Y7IR24	Uncharacterized protein.	Uncharacterized protein.	0.447
C5167_001162	C5167_019018	A0A4Y7KVV2	A0A4Y7IPJ2	Uncharacterized protein.	Uncharacterized protein.	0.447
C5167_001162	C5167_020189	A0A4Y7KVV2	A0A4Y7IVN0	Uncharacterized protein.	Uncharacterized protein.	0.552
C5167_001162	C5167_020444	A0A4Y7KVV2	A0A4Y7IW93	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.767
C5167_001162	C5167_020599	A0A4Y7KVV2	A0A4Y7IWP8	Uncharacterized protein.	Uncharacterized protein.	0.552
C5167_001162	C5167_025336	A0A4Y7KVV2	A0A4Y7JU60	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.447
C5167_001162	C5167_033007	A0A4Y7KVV2	A0A4Y7KBZ3	Uncharacterized protein.	Uncharacterized protein.	0.447
C5167_001162	C5167_035441	A0A4Y7KVV2	A0A4Y7KFZ5	Uncharacterized protein.	Uncharacterized protein.	0.775
C5167_001162	C5167_036985	A0A4Y7KVV2	A0A4Y7I5G9	Uncharacterized protein.	Uncharacterized protein.	0.562
C5167_001162	C5167_038171	A0A4Y7KVV2	A0A4Y7ICK4	Uncharacterized protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.767
C5167_001162	C5167_042811	A0A4Y7KVV2	A0A4Y7L6H0	Uncharacterized protein.	Uncharacterized protein.	0.552
C5167_001162	C5167_043633	A0A4Y7KVV2	A0A4Y7LA49	Uncharacterized protein.	Uncharacterized protein.	0.542
C5167_001162	C5167_049684	A0A4Y7KVV2	A0A4Y7KLH9	Uncharacterized protein.	Uncharacterized protein.	0.552
C5167_001162	C5167_050956	A0A4Y7KVV2	A0A4Y7KQ29	Uncharacterized protein.	Uncharacterized protein.	0.549