(6 nodes) Rho protein signal transduction, and Rab subfamily of small GTPases network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_017314	Uncharacterized protein. (272 aa)
	C5167_013547	Uncharacterized protein. (214 aa)
	C5167_025070	Uncharacterized protein. (280 aa)
	C5167_009649	Uncharacterized protein. (211 aa)
	C5167_002633	Uncharacterized protein. (217 aa)
	C5167_047001	Uncharacterized protein. (217 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002633	C5167_017314	A0A4Y7KYS1	A0A4Y7IJ48	Uncharacterized protein.	Uncharacterized protein.	0.465
C5167_002633	C5167_025070	A0A4Y7KYS1	A0A4Y7JS03	Uncharacterized protein.	Uncharacterized protein.	0.465
C5167_009649	C5167_017314	A0A4Y7JY10	A0A4Y7IJ48	Uncharacterized protein.	Uncharacterized protein.	0.567
C5167_009649	C5167_025070	A0A4Y7JY10	A0A4Y7JS03	Uncharacterized protein.	Uncharacterized protein.	0.539
C5167_013547	C5167_017314	A0A4Y7J4V8	A0A4Y7IJ48	Uncharacterized protein.	Uncharacterized protein.	0.567
C5167_013547	C5167_025070	A0A4Y7J4V8	A0A4Y7JS03	Uncharacterized protein.	Uncharacterized protein.	0.539
C5167_017314	C5167_002633	A0A4Y7IJ48	A0A4Y7KYS1	Uncharacterized protein.	Uncharacterized protein.	0.465
C5167_017314	C5167_009649	A0A4Y7IJ48	A0A4Y7JY10	Uncharacterized protein.	Uncharacterized protein.	0.567
C5167_017314	C5167_013547	A0A4Y7IJ48	A0A4Y7J4V8	Uncharacterized protein.	Uncharacterized protein.	0.567
C5167_017314	C5167_047001	A0A4Y7IJ48	A0A4Y7LFE2	Uncharacterized protein.	Uncharacterized protein.	0.465
C5167_025070	C5167_002633	A0A4Y7JS03	A0A4Y7KYS1	Uncharacterized protein.	Uncharacterized protein.	0.465
C5167_025070	C5167_009649	A0A4Y7JS03	A0A4Y7JY10	Uncharacterized protein.	Uncharacterized protein.	0.539
C5167_025070	C5167_013547	A0A4Y7JS03	A0A4Y7J4V8	Uncharacterized protein.	Uncharacterized protein.	0.539
C5167_025070	C5167_047001	A0A4Y7JS03	A0A4Y7LFE2	Uncharacterized protein.	Uncharacterized protein.	0.465
C5167_047001	C5167_017314	A0A4Y7LFE2	A0A4Y7IJ48	Uncharacterized protein.	Uncharacterized protein.	0.465
C5167_047001	C5167_025070	A0A4Y7LFE2	A0A4Y7JS03	Uncharacterized protein.	Uncharacterized protein.	0.465