(21 nodes) Mixed, incl. TOR complex, and PH domain network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_036792	WD_REPEATS_REGION domain-containing protein. (144 aa)
	C5167_038246	Uncharacterized protein. (195 aa)
	C5167_037498	Uncharacterized protein. (459 aa)
	C5167_037497	Uncharacterized protein. (248 aa)
	C5167_017868	Uncharacterized protein. (1389 aa)
	C5167_017789	Uncharacterized protein. (206 aa)
	C5167_021119	Uncharacterized protein. (556 aa)
	C5167_014691	Uncharacterized protein. (259 aa)
	C5167_024250	Uncharacterized protein. (100 aa)
	C5167_024950	DUF295 domain-containing protein. (239 aa)
	C5167_010651	Uncharacterized protein. (182 aa)
	C5167_033009	Uncharacterized protein. (162 aa)
	C5167_033761	Protein kinase domain-containing protein. (483 aa)
	C5167_048982	Uncharacterized protein. (273 aa)
	C5167_000800	WD_REPEATS_REGION domain-containing protein. (336 aa)
	C5167_002128	Uncharacterized protein; Belongs to the protein kinase superfamily. (487 aa)
	C5167_003058	Protein kinase domain-containing protein. (483 aa)
	C5167_042627	Uncharacterized protein. (102 aa)
	C5167_042581	Uncharacterized protein. (169 aa)
	C5167_045195	Protein kinase domain-containing protein. (500 aa)
	C5167_045372	Uncharacterized protein; Belongs to the protein kinase superfamily. (484 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_000800	C5167_002128	A0A4Y7KV50	A0A4Y7KXA4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.728
C5167_000800	C5167_010651	A0A4Y7KV50	A0A4Y7K4R9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.855
C5167_000800	C5167_014691	A0A4Y7KV50	A0A4Y7J895	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.954
C5167_000800	C5167_017789	A0A4Y7KV50	A0A4Y7INQ6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.785
C5167_000800	C5167_017868	A0A4Y7KV50	A0A4Y7IL57	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.457
C5167_000800	C5167_021119	A0A4Y7KV50	A0A4Y7IY11	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.457
C5167_000800	C5167_024250	A0A4Y7KV50	A0A4Y7JN15	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.785
C5167_000800	C5167_024950	A0A4Y7KV50	A0A4Y7JR30	WD_REPEATS_REGION domain-containing protein.	DUF295 domain-containing protein.	0.931
C5167_000800	C5167_033009	A0A4Y7KV50	A0A4Y7KD18	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.855
C5167_000800	C5167_037497	A0A4Y7KV50	A0A4Y7IA88	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.785
C5167_000800	C5167_037498	A0A4Y7KV50	A0A4Y7IA02	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.785
C5167_000800	C5167_038246	A0A4Y7KV50	A0A4Y7I8Y7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.785
C5167_000800	C5167_042627	A0A4Y7KV50	A0A4Y7L6P4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.728
C5167_000800	C5167_045372	A0A4Y7KV50	A0A4Y7LC53	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.728
C5167_000800	C5167_048982	A0A4Y7KV50	A0A4Y7KNP0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.785
C5167_002128	C5167_000800	A0A4Y7KXA4	A0A4Y7KV50	Uncharacterized protein; Belongs to the protein kinase superfamily.	WD_REPEATS_REGION domain-containing protein.	0.728
C5167_002128	C5167_003058	A0A4Y7KXA4	A0A4Y7L3A9	Uncharacterized protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.940
C5167_002128	C5167_010651	A0A4Y7KXA4	A0A4Y7K4R9	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.446
C5167_002128	C5167_014691	A0A4Y7KXA4	A0A4Y7J895	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.906
C5167_002128	C5167_017789	A0A4Y7KXA4	A0A4Y7INQ6	Uncharacterized protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.859