(47 nodes) SANT SWI3, ADA2, N-CoR and TFIIIB DNA-binding domains network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_037416	Uncharacterized protein. (430 aa)
	C5167_039290	Uncharacterized protein. (483 aa)
	C5167_017564	Uncharacterized protein. (358 aa)
	C5167_017775	Uncharacterized protein. (358 aa)
	C5167_018872	Uncharacterized protein. (293 aa)
	C5167_018871	Uncharacterized protein. (262 aa)
	C5167_019073	Uncharacterized protein. (473 aa)
	C5167_019189	Uncharacterized protein. (482 aa)
	C5167_019523	Uncharacterized protein. (266 aa)
	C5167_019524	Uncharacterized protein. (293 aa)
	C5167_021027	Uncharacterized protein. (374 aa)
	C5167_021026	Uncharacterized protein. (375 aa)
	C5167_013482	Uncharacterized protein. (364 aa)
	C5167_012699	Uncharacterized protein. (258 aa)
	C5167_014390	Uncharacterized protein. (367 aa)
	C5167_013795	Uncharacterized protein. (381 aa)
	C5167_005924	Uncharacterized protein. (414 aa)
	C5167_006146	Uncharacterized protein. (387 aa)
	C5167_022544	Uncharacterized protein. (414 aa)
	C5167_022647	Uncharacterized protein. (393 aa)
	C5167_023781	Uncharacterized protein. (255 aa)
	C5167_009361	Uncharacterized protein. (485 aa)
	C5167_009933	Uncharacterized protein. (431 aa)
	C5167_010682	Uncharacterized protein. (279 aa)
	C5167_033327	Uncharacterized protein. (193 aa)
	C5167_033233	Uncharacterized protein. (316 aa)
	C5167_033454	Uncharacterized protein. (423 aa)
	C5167_033644	Uncharacterized protein. (332 aa)
	C5167_035186	Uncharacterized protein. (208 aa)
	C5167_035562	Uncharacterized protein. (399 aa)
	C5167_048431	Uncharacterized protein. (594 aa)
	C5167_050049	Uncharacterized protein. (419 aa)
	C5167_050367	Uncharacterized protein. (255 aa)
	C5167_051042	Uncharacterized protein. (1563 aa)
	C5167_001274	Uncharacterized protein. (368 aa)
	C5167_002635	Uncharacterized protein. (405 aa)
	C5167_003656	Uncharacterized protein. (284 aa)
	C5167_042947	Uncharacterized protein. (446 aa)
	C5167_043510	Uncharacterized protein. (398 aa)
	C5167_042275	Uncharacterized protein. (208 aa)
	C5167_042384	Uncharacterized protein. (370 aa)
	C5167_043109	Uncharacterized protein. (385 aa)
	C5167_043716	Uncharacterized protein. (1557 aa)
	C5167_043581	HTH myb-type domain-containing protein. (203 aa)
	C5167_045982	Uncharacterized protein. (562 aa)
	C5167_047296	Uncharacterized protein. (276 aa)
	C5167_047670	Uncharacterized protein. (507 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001274	C5167_002635	A0A4Y7KYW1	A0A4Y7KZT8	Uncharacterized protein.	Uncharacterized protein.	0.424
C5167_001274	C5167_043581	A0A4Y7KYW1	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.500
C5167_001274	C5167_045982	A0A4Y7KYW1	A0A4Y7LGA8	Uncharacterized protein.	Uncharacterized protein.	0.522
C5167_002635	C5167_001274	A0A4Y7KZT8	A0A4Y7KYW1	Uncharacterized protein.	Uncharacterized protein.	0.424
C5167_003656	C5167_043581	A0A4Y7L1K9	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.522
C5167_005924	C5167_043581	A0A4Y7JBV6	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.492
C5167_009361	C5167_043581	A0A4Y7K027	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.468
C5167_009933	C5167_043581	A0A4Y7K1V1	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.500
C5167_012699	C5167_043581	A0A4Y7J257	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.519
C5167_013482	C5167_043581	A0A4Y7J1E4	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.500
C5167_017775	C5167_043581	A0A4Y7IPD1	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.500
C5167_018871	C5167_043581	A0A4Y7ISH0	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.500
C5167_019523	C5167_043581	A0A4Y7IUC7	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.501
C5167_019524	C5167_043581	A0A4Y7IUD6	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.506
C5167_021026	C5167_043581	A0A4Y7IYL9	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.493
C5167_021027	C5167_043581	A0A4Y7IXS9	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.488
C5167_022544	C5167_043581	A0A4Y7JL96	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.491
C5167_022647	C5167_043581	A0A4Y7JLP4	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.476
C5167_023781	C5167_043581	A0A4Y7JMQ5	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.510
C5167_033233	C5167_043581	A0A4Y7KD79	A0A4Y7L958	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.507