(5 nodes) U5 snRNA 3-end processing, and Exosome complex RNA-binding protein 1/RRP40/RRP4 network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_014181	Uncharacterized protein. (125 aa)
	C5167_009557	Uncharacterized protein. (346 aa)
	C5167_048941	Uncharacterized protein. (442 aa)
	C5167_051171	Uncharacterized protein. (268 aa)
	C5167_043803	Uncharacterized protein. (219 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_009557	C5167_014181	A0A4Y7K1N4	A0A4Y7J6R3	Uncharacterized protein.	Uncharacterized protein.	0.997
C5167_009557	C5167_043803	A0A4Y7K1N4	A0A4Y7LAC8	Uncharacterized protein.	Uncharacterized protein.	0.998
C5167_009557	C5167_048941	A0A4Y7K1N4	A0A4Y7KMR3	Uncharacterized protein.	Uncharacterized protein.	0.996
C5167_009557	C5167_051171	A0A4Y7K1N4	A0A4Y7KTK4	Uncharacterized protein.	Uncharacterized protein.	0.997
C5167_014181	C5167_009557	A0A4Y7J6R3	A0A4Y7K1N4	Uncharacterized protein.	Uncharacterized protein.	0.997
C5167_014181	C5167_043803	A0A4Y7J6R3	A0A4Y7LAC8	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_014181	C5167_048941	A0A4Y7J6R3	A0A4Y7KMR3	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_014181	C5167_051171	A0A4Y7J6R3	A0A4Y7KTK4	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_043803	C5167_009557	A0A4Y7LAC8	A0A4Y7K1N4	Uncharacterized protein.	Uncharacterized protein.	0.998
C5167_043803	C5167_014181	A0A4Y7LAC8	A0A4Y7J6R3	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_043803	C5167_048941	A0A4Y7LAC8	A0A4Y7KMR3	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_043803	C5167_051171	A0A4Y7LAC8	A0A4Y7KTK4	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_048941	C5167_009557	A0A4Y7KMR3	A0A4Y7K1N4	Uncharacterized protein.	Uncharacterized protein.	0.996
C5167_048941	C5167_014181	A0A4Y7KMR3	A0A4Y7J6R3	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_048941	C5167_043803	A0A4Y7KMR3	A0A4Y7LAC8	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_048941	C5167_051171	A0A4Y7KMR3	A0A4Y7KTK4	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_051171	C5167_009557	A0A4Y7KTK4	A0A4Y7K1N4	Uncharacterized protein.	Uncharacterized protein.	0.997
C5167_051171	C5167_014181	A0A4Y7KTK4	A0A4Y7J6R3	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_051171	C5167_043803	A0A4Y7KTK4	A0A4Y7LAC8	Uncharacterized protein.	Uncharacterized protein.	0.999
C5167_051171	C5167_048941	A0A4Y7KTK4	A0A4Y7KMR3	Uncharacterized protein.	Uncharacterized protein.	0.999