(44 nodes) Mixed, incl. ISG15 antiviral mechanism, and PABC (PABP) domain network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_037002	Uncharacterized protein. (73 aa)
	C5167_036968	Uncharacterized protein. (713 aa)
	C5167_037041	PABC domain-containing protein. (274 aa)
	C5167_038792	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (221 aa)
	C5167_038046	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (658 aa)
	C5167_039067	Uncharacterized protein. (589 aa)
	C5167_017641	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (643 aa)
	C5167_017845	LsmAD domain-containing protein. (638 aa)
	C5167_016898	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (660 aa)
	C5167_018498	Uncharacterized protein. (666 aa)
	C5167_019938	Uncharacterized protein. (666 aa)
	C5167_020801	Uncharacterized protein. (459 aa)
	C5167_021337	Uncharacterized protein; Belongs to the DEAD box helicase family. (414 aa)
	C5167_021086	LsmAD domain-containing protein. (670 aa)
	C5167_015829	Uncharacterized protein. (239 aa)
	C5167_023483	AD domain-containing protein. (125 aa)
	C5167_008446	Uncharacterized protein. (714 aa)
	C5167_009500	Uncharacterized protein. (442 aa)
	C5167_010445	HTH La-type RNA-binding domain-containing protein. (399 aa)
	C5167_011199	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (221 aa)
	C5167_011369	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (227 aa)
	C5167_031760	Uncharacterized protein. (506 aa)
	C5167_031391	LsmAD domain-containing protein. (588 aa)
	C5167_032366	MI domain-containing protein. (1758 aa)
	C5167_031468	Uncharacterized protein; Belongs to the DEAD box helicase family. (423 aa)
	C5167_032722	Uncharacterized protein. (402 aa)
	C5167_035114	Uncharacterized protein. (441 aa)
	C5167_035288	MI domain-containing protein. (783 aa)
	C5167_050012	MI domain-containing protein. (748 aa)
	C5167_050072	Uncharacterized protein. (710 aa)
	C5167_051106	Uncharacterized protein. (101 aa)
	C5167_001808	Uncharacterized protein. (639 aa)
	C5167_001344	Uncharacterized protein; Belongs to the DEAD box helicase family. (411 aa)
	C5167_001295	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (650 aa)
	C5167_001214	HTH La-type RNA-binding domain-containing protein. (236 aa)
	C5167_001419	Uncharacterized protein. (586 aa)
	C5167_001892	Uncharacterized protein. (443 aa)
	C5167_003564	HTH La-type RNA-binding domain-containing protein. (462 aa)
	C5167_043494	Uncharacterized protein. (456 aa)
	C5167_044387	Uncharacterized protein. (375 aa)
	C5167_044010	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (202 aa)
	C5167_045754	Uncharacterized protein. (637 aa)
	C5167_045628	Uncharacterized protein. (443 aa)
	C5167_047464	Uncharacterized protein. (650 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001214	C5167_032366	A0A4Y7KXE3	A0A4Y7K7E4	HTH La-type RNA-binding domain-containing protein.	MI domain-containing protein.	0.454
C5167_001214	C5167_035288	A0A4Y7KXE3	A0A4Y7KJB4	HTH La-type RNA-binding domain-containing protein.	MI domain-containing protein.	0.454
C5167_001214	C5167_047464	A0A4Y7KXE3	A0A4Y7LGQ4	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.454
C5167_001214	C5167_050012	A0A4Y7KXE3	A0A4Y7KQ67	HTH La-type RNA-binding domain-containing protein.	MI domain-containing protein.	0.454
C5167_001295	C5167_001344	A0A4Y7KWG4	A0A4Y7KWB9	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.566
C5167_001295	C5167_001808	A0A4Y7KWG4	A0A4Y7KW98	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.479
C5167_001295	C5167_001892	A0A4Y7KWG4	A0A4Y7KZA2	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.566
C5167_001295	C5167_009500	A0A4Y7KWG4	A0A4Y7K0H5	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.566
C5167_001295	C5167_011199	A0A4Y7KWG4	A0A4Y7K3U3	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.746
C5167_001295	C5167_011369	A0A4Y7KWG4	A0A4Y7K420	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.746
C5167_001295	C5167_017845	A0A4Y7KWG4	A0A4Y7IL26	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	LsmAD domain-containing protein.	0.622
C5167_001295	C5167_020801	A0A4Y7KWG4	A0A4Y7IX93	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.566
C5167_001295	C5167_021086	A0A4Y7KWG4	A0A4Y7IZ12	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	LsmAD domain-containing protein.	0.622
C5167_001295	C5167_021337	A0A4Y7KWG4	A0A4Y7IYN8	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.566
C5167_001295	C5167_031391	A0A4Y7KWG4	A0A4Y7K717	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	LsmAD domain-containing protein.	0.622
C5167_001295	C5167_031468	A0A4Y7KWG4	A0A4Y7K895	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.566
C5167_001295	C5167_032366	A0A4Y7KWG4	A0A4Y7K7E4	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	MI domain-containing protein.	0.764
C5167_001295	C5167_035288	A0A4Y7KWG4	A0A4Y7KJB4	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	MI domain-containing protein.	0.764
C5167_001295	C5167_038792	A0A4Y7KWG4	A0A4Y7IA97	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.746
C5167_001295	C5167_039067	A0A4Y7KWG4	A0A4Y7IF51	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	Uncharacterized protein.	0.566