(5 nodes) Proximal/distal pattern formation, and Transcription repressor KANADI network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_040846	LOB domain-containing protein. (210 aa)
	C5167_017107	Uncharacterized protein. (352 aa)
	C5167_017428	Uncharacterized protein. (167 aa)
	C5167_032482	SANT domain-containing protein. (162 aa)
	C5167_002954	Uncharacterized protein. (375 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002954	C5167_017107	A0A4Y7L3K0	A0A4Y7ILT0	Uncharacterized protein.	Uncharacterized protein.	0.402
C5167_002954	C5167_017428	A0A4Y7L3K0	A0A4Y7IMR2	Uncharacterized protein.	Uncharacterized protein.	0.416
C5167_002954	C5167_040846	A0A4Y7L3K0	A0A4Y7IJN0	Uncharacterized protein.	LOB domain-containing protein.	0.888
C5167_017107	C5167_002954	A0A4Y7ILT0	A0A4Y7L3K0	Uncharacterized protein.	Uncharacterized protein.	0.402
C5167_017107	C5167_040846	A0A4Y7ILT0	A0A4Y7IJN0	Uncharacterized protein.	LOB domain-containing protein.	0.538
C5167_017428	C5167_002954	A0A4Y7IMR2	A0A4Y7L3K0	Uncharacterized protein.	Uncharacterized protein.	0.416
C5167_017428	C5167_032482	A0A4Y7IMR2	A0A4Y7KBP7	Uncharacterized protein.	SANT domain-containing protein.	0.443
C5167_017428	C5167_040846	A0A4Y7IMR2	A0A4Y7IJN0	Uncharacterized protein.	LOB domain-containing protein.	0.618
C5167_032482	C5167_017428	A0A4Y7KBP7	A0A4Y7IMR2	SANT domain-containing protein.	Uncharacterized protein.	0.443
C5167_032482	C5167_040846	A0A4Y7KBP7	A0A4Y7IJN0	SANT domain-containing protein.	LOB domain-containing protein.	0.526
C5167_040846	C5167_002954	A0A4Y7IJN0	A0A4Y7L3K0	LOB domain-containing protein.	Uncharacterized protein.	0.888
C5167_040846	C5167_017107	A0A4Y7IJN0	A0A4Y7ILT0	LOB domain-containing protein.	Uncharacterized protein.	0.538
C5167_040846	C5167_017428	A0A4Y7IJN0	A0A4Y7IMR2	LOB domain-containing protein.	Uncharacterized protein.	0.618
C5167_040846	C5167_032482	A0A4Y7IJN0	A0A4Y7KBP7	LOB domain-containing protein.	SANT domain-containing protein.	0.526