(38 nodes) Homeobox KN domain, and Leucine zipper, homeobox-associated network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_037421	Uncharacterized protein. (432 aa)
	C5167_039715	Homeobox domain-containing protein. (117 aa)
	C5167_038454	Homeobox domain-containing protein. (864 aa)
	C5167_039145	Uncharacterized protein. (395 aa)
	C5167_039555	Homeobox domain-containing protein. (161 aa)
	C5167_040989	Homeobox domain-containing protein. (312 aa)
	C5167_018414	Homeobox domain-containing protein. (589 aa)
	C5167_018552	Homeobox domain-containing protein. (417 aa)
	C5167_020425	Protein kinase domain-containing protein. (539 aa)
	C5167_020007	Homeobox domain-containing protein. (618 aa)
	C5167_012773	Uncharacterized protein. (498 aa)
	C5167_013992	Homeobox domain-containing protein. (833 aa)
	C5167_014581	Homeobox domain-containing protein. (452 aa)
	C5167_013493	Homeobox domain-containing protein. (302 aa)
	C5167_014470	Protein kinase domain-containing protein. (543 aa)
	C5167_015542	Homeobox domain-containing protein. (250 aa)
	C5167_005977	Homeobox domain-containing protein. (290 aa)
	C5167_022528	Homeobox domain-containing protein. (290 aa)
	C5167_023167	Dipeptide epimerase. (434 aa)
	C5167_023664	Uncharacterized protein. (242 aa)
	C5167_024446	Homeobox domain-containing protein. (300 aa)
	C5167_008384	Uncharacterized protein. (132 aa)
	C5167_010760	POX domain-containing protein. (653 aa)
	C5167_009423	Uncharacterized protein. (391 aa)
	C5167_009924	Uncharacterized protein. (432 aa)
	C5167_011060	SATase_N domain-containing protein. (369 aa)
	C5167_031518	Homeobox domain-containing protein. (316 aa)
	C5167_032229	Homeobox domain-containing protein. (337 aa)
	C5167_033054	Homeobox domain-containing protein. (343 aa)
	C5167_035604	Homeobox domain-containing protein. (752 aa)
	C5167_035233	Uncharacterized protein. (404 aa)
	C5167_049921	Homeobox domain-containing protein. (332 aa)
	C5167_003883	Homeobox domain-containing protein. (705 aa)
	C5167_002969	Uncharacterized protein. (643 aa)
	C5167_003404	Homeobox domain-containing protein. (357 aa)
	C5167_044134	Homeobox domain-containing protein. (543 aa)
	C5167_046056	Homeobox domain-containing protein. (360 aa)
	C5167_046692	Uncharacterized protein. (645 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002969	C5167_011060	A0A4Y7L340	A0A4Y7K5X2	Uncharacterized protein.	SATase_N domain-containing protein.	0.452
C5167_003404	C5167_013493	A0A4Y7L3K4	A0A4Y7J3W3	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.572
C5167_003404	C5167_018414	A0A4Y7L3K4	A0A4Y7IQB0	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.482
C5167_003404	C5167_020007	A0A4Y7L3K4	A0A4Y7IV56	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.482
C5167_003404	C5167_024446	A0A4Y7L3K4	A0A4Y7JRN3	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.574
C5167_003404	C5167_031518	A0A4Y7L3K4	A0A4Y7K7H3	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.482
C5167_003404	C5167_044134	A0A4Y7L3K4	A0A4Y7LA91	Homeobox domain-containing protein.	Homeobox domain-containing protein.	0.482
C5167_008384	C5167_010760	A0A4Y7JY87	A0A4Y7K155	Uncharacterized protein.	POX domain-containing protein.	0.490
C5167_008384	C5167_013992	A0A4Y7JY87	A0A4Y7J1Y6	Uncharacterized protein.	Homeobox domain-containing protein.	0.490
C5167_008384	C5167_014470	A0A4Y7JY87	A0A4Y7J6E4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.441
C5167_008384	C5167_020425	A0A4Y7JY87	A0A4Y7IV34	Uncharacterized protein.	Protein kinase domain-containing protein.	0.441
C5167_008384	C5167_038454	A0A4Y7JY87	A0A4Y7IDJ7	Uncharacterized protein.	Homeobox domain-containing protein.	0.490
C5167_009423	C5167_018414	A0A4Y7K196	A0A4Y7IQB0	Uncharacterized protein.	Homeobox domain-containing protein.	0.562
C5167_009423	C5167_018552	A0A4Y7K196	A0A4Y7IR02	Uncharacterized protein.	Homeobox domain-containing protein.	0.784
C5167_009423	C5167_020007	A0A4Y7K196	A0A4Y7IV56	Uncharacterized protein.	Homeobox domain-containing protein.	0.564
C5167_009423	C5167_031518	A0A4Y7K196	A0A4Y7K7H3	Uncharacterized protein.	Homeobox domain-containing protein.	0.487
C5167_009423	C5167_035604	A0A4Y7K196	A0A4Y7KFH3	Uncharacterized protein.	Homeobox domain-containing protein.	0.621
C5167_009423	C5167_044134	A0A4Y7K196	A0A4Y7LA91	Uncharacterized protein.	Homeobox domain-containing protein.	0.483
C5167_009924	C5167_018552	A0A4Y7K2T9	A0A4Y7IR02	Uncharacterized protein.	Homeobox domain-containing protein.	0.810
C5167_009924	C5167_035604	A0A4Y7K2T9	A0A4Y7KFH3	Uncharacterized protein.	Homeobox domain-containing protein.	0.627