(5 nodes) Mixed, incl. Yippee family, and At5g01610-like superfamily network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_037447	Uncharacterized protein. (356 aa)
	C5167_040139	Uncharacterized protein. (139 aa)
	C5167_010021	Uncharacterized protein. (356 aa)
	C5167_002362	Uncharacterized protein. (170 aa)
	C5167_002457	Protein yippee-like; Belongs to the yippee family. (129 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002362	C5167_002457	A0A4Y7KXV8	A0A4Y7KY60	Uncharacterized protein.	Protein yippee-like; Belongs to the yippee family.	0.626
C5167_002362	C5167_010021	A0A4Y7KXV8	A0A4Y7K1V4	Uncharacterized protein.	Uncharacterized protein.	0.445
C5167_002362	C5167_037447	A0A4Y7KXV8	A0A4Y7I6Q4	Uncharacterized protein.	Uncharacterized protein.	0.445
C5167_002362	C5167_040139	A0A4Y7KXV8	A0A4Y7IIC2	Uncharacterized protein.	Uncharacterized protein.	0.499
C5167_002457	C5167_002362	A0A4Y7KY60	A0A4Y7KXV8	Protein yippee-like; Belongs to the yippee family.	Uncharacterized protein.	0.626
C5167_010021	C5167_002362	A0A4Y7K1V4	A0A4Y7KXV8	Uncharacterized protein.	Uncharacterized protein.	0.445
C5167_037447	C5167_002362	A0A4Y7I6Q4	A0A4Y7KXV8	Uncharacterized protein.	Uncharacterized protein.	0.445
C5167_040139	C5167_002362	A0A4Y7IIC2	A0A4Y7KXV8	Uncharacterized protein.	Uncharacterized protein.	0.499