(6 nodes) Mixed, incl. Sterol transport protein NPC2-like, and Sey1/RHD3-like, three-helix bundle domain network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_018221	Protein ROOT HAIR DEFECTIVE 3 homolog; Probable GTP-binding protein that may be involved in cell development; Belongs to the TRAFAC class dynamin-like GTPase superfamily. GB1/RHD3-type GTPase family. RHD3 subfamily. (820 aa)
	C5167_007102	HVA22-like protein. (142 aa)
	C5167_033026	Uncharacterized protein. (316 aa)
	C5167_003713	ML domain-containing protein. (157 aa)
	C5167_042407	HVA22-like protein. (294 aa)
	C5167_045476	ML domain-containing protein. (158 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_003713	C5167_007102	A0A4Y7KX15	A0A4Y7JG74	ML domain-containing protein.	HVA22-like protein.	0.461
C5167_003713	C5167_033026	A0A4Y7KX15	A0A4Y7K970	ML domain-containing protein.	Uncharacterized protein.	0.461
C5167_003713	C5167_042407	A0A4Y7KX15	A0A4Y7L622	ML domain-containing protein.	HVA22-like protein.	0.461
C5167_007102	C5167_003713	A0A4Y7JG74	A0A4Y7KX15	HVA22-like protein.	ML domain-containing protein.	0.461
C5167_007102	C5167_045476	A0A4Y7JG74	A0A4Y7LEH1	HVA22-like protein.	ML domain-containing protein.	0.461
C5167_033026	C5167_003713	A0A4Y7K970	A0A4Y7KX15	Uncharacterized protein.	ML domain-containing protein.	0.461
C5167_033026	C5167_045476	A0A4Y7K970	A0A4Y7LEH1	Uncharacterized protein.	ML domain-containing protein.	0.461
C5167_042407	C5167_003713	A0A4Y7L622	A0A4Y7KX15	HVA22-like protein.	ML domain-containing protein.	0.461
C5167_042407	C5167_045476	A0A4Y7L622	A0A4Y7LEH1	HVA22-like protein.	ML domain-containing protein.	0.461
C5167_045476	C5167_007102	A0A4Y7LEH1	A0A4Y7JG74	ML domain-containing protein.	HVA22-like protein.	0.461
C5167_045476	C5167_033026	A0A4Y7LEH1	A0A4Y7K970	ML domain-containing protein.	Uncharacterized protein.	0.461
C5167_045476	C5167_042407	A0A4Y7LEH1	A0A4Y7L622	ML domain-containing protein.	HVA22-like protein.	0.461