(48 nodes) CCR4-NOT complex network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_037303	Uncharacterized protein. (163 aa)
	C5167_038608	Thioredoxin domain-containing protein. (207 aa)
	C5167_040672	CNOT1_TTP_bind domain-containing protein. (215 aa)
	C5167_017511	Uncharacterized protein. (420 aa)
	C5167_012710	TPR_REGION domain-containing protein. (839 aa)
	C5167_012763	Uncharacterized protein. (218 aa)
	C5167_012294	Uncharacterized protein. (2228 aa)
	C5167_004727	NOT2_3_5 domain-containing protein. (621 aa)
	C5167_004429	Uncharacterized protein. (323 aa)
	C5167_004725	NOT2_3_5 domain-containing protein. (422 aa)
	C5167_005371	Uncharacterized protein. (427 aa)
	C5167_022250	Uncharacterized protein. (169 aa)
	C5167_022905	Endo/exonuclease/phosphatase domain-containing protein. (462 aa)
	C5167_023691	Uncharacterized protein. (93 aa)
	C5167_022865	Uncharacterized protein. (310 aa)
	C5167_023740	Uncharacterized protein. (349 aa)
	C5167_023658	Uncharacterized protein. (287 aa)
	C5167_023753	TPR_REGION domain-containing protein. (838 aa)
	C5167_025400	Not1 domain-containing protein. (339 aa)
	C5167_025396	Uncharacterized protein. (356 aa)
	C5167_025395	DUF3819 domain-containing protein. (87 aa)
	C5167_025399	CNOT1_CAF1_bind domain-containing protein. (68 aa)
	C5167_025552	Uncharacterized protein. (2240 aa)
	C5167_009404	Uncharacterized protein. (293 aa)
	C5167_031663	Uncharacterized protein. (1095 aa)
	C5167_032929	Uncharacterized protein. (187 aa)
	C5167_032589	Endo/exonuclease/phosphatase domain-containing protein. (410 aa)
	C5167_033453	Uncharacterized protein. (337 aa)
	C5167_048386	NOT2_3_5 domain-containing protein. (624 aa)
	C5167_047969	Uncharacterized protein. (323 aa)
	C5167_049217	Uncharacterized protein. (271 aa)
	C5167_050828	Uncharacterized protein. (214 aa)
	C5167_050951	Uncharacterized protein. (217 aa)
	C5167_000368	Uncharacterized protein. (189 aa)
	C5167_000626	NOT2_3_5 domain-containing protein. (660 aa)
	C5167_002770	Uncharacterized protein. (1064 aa)
	C5167_002529	Uncharacterized protein. (273 aa)
	C5167_001960	Not3 domain-containing protein. (756 aa)
	C5167_003017	Uncharacterized protein. (1023 aa)
	C5167_042321	RNase III domain-containing protein. (188 aa)
	C5167_003441	Uncharacterized protein. (606 aa)
	C5167_044919	NOT2_3_5 domain-containing protein. (636 aa)
	C5167_045686	Not3 domain-containing protein. (770 aa)
	C5167_046583	Uncharacterized protein. (1058 aa)
	C5167_046184	Uncharacterized protein. (95 aa)
	C5167_046020	Uncharacterized protein. (606 aa)
	C5167_046357	RING-type domain-containing protein. (127 aa)
	C5167_046903	Uncharacterized protein. (280 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_000368	C5167_000626	A0A4Y7KV56	A0A4Y7KVP7	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.866
C5167_000368	C5167_001960	A0A4Y7KV56	A0A4Y7KZH5	Uncharacterized protein.	Not3 domain-containing protein.	0.897
C5167_000368	C5167_002529	A0A4Y7KV56	A0A4Y7KYF5	Uncharacterized protein.	Uncharacterized protein.	0.783
C5167_000368	C5167_002770	A0A4Y7KV56	A0A4Y7KX71	Uncharacterized protein.	Uncharacterized protein.	0.789
C5167_000368	C5167_003017	A0A4Y7KV56	A0A4Y7KZU2	Uncharacterized protein.	Uncharacterized protein.	0.789
C5167_000368	C5167_003441	A0A4Y7KV56	A0A4Y7L4K2	Uncharacterized protein.	Uncharacterized protein.	0.506
C5167_000368	C5167_004429	A0A4Y7KV56	A0A4Y7J8I6	Uncharacterized protein.	Uncharacterized protein.	0.963
C5167_000368	C5167_004725	A0A4Y7KV56	A0A4Y7JBI2	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.866
C5167_000368	C5167_004727	A0A4Y7KV56	A0A4Y7J8F0	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.866
C5167_000368	C5167_005371	A0A4Y7KV56	A0A4Y7JDJ6	Uncharacterized protein.	Uncharacterized protein.	0.799
C5167_000368	C5167_009404	A0A4Y7KV56	A0A4Y7K174	Uncharacterized protein.	Uncharacterized protein.	0.815
C5167_000368	C5167_012294	A0A4Y7KV56	A0A4Y7J0Z7	Uncharacterized protein.	Uncharacterized protein.	0.870
C5167_000368	C5167_012763	A0A4Y7KV56	A0A4Y7J0E8	Uncharacterized protein.	Uncharacterized protein.	0.870
C5167_000368	C5167_017511	A0A4Y7KV56	A0A4Y7IK57	Uncharacterized protein.	Uncharacterized protein.	0.991
C5167_000368	C5167_022250	A0A4Y7KV56	A0A4Y7JHC3	Uncharacterized protein.	Uncharacterized protein.	0.789
C5167_000368	C5167_022865	A0A4Y7KV56	A0A4Y7JM58	Uncharacterized protein.	Uncharacterized protein.	0.675
C5167_000368	C5167_022905	A0A4Y7KV56	A0A4Y7JKQ5	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.506
C5167_000368	C5167_023658	A0A4Y7KV56	A0A4Y7JPM8	Uncharacterized protein.	Uncharacterized protein.	0.783
C5167_000368	C5167_023691	A0A4Y7KV56	A0A4Y7JLG2	Uncharacterized protein.	Uncharacterized protein.	0.506
C5167_000368	C5167_023740	A0A4Y7KV56	A0A4Y7JN42	Uncharacterized protein.	Uncharacterized protein.	0.783