(27 nodes) Nuclear speck network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_036352	Uncharacterized protein. (228 aa)
	C5167_017017	Uncharacterized protein. (264 aa)
	C5167_020396	Uncharacterized protein. (321 aa)
	C5167_020172	Uncharacterized protein. (77 aa)
	C5167_020865	RRM domain-containing protein. (193 aa)
	C5167_020975	RRM domain-containing protein. (286 aa)
	C5167_014439	RRM domain-containing protein. (154 aa)
	C5167_006434	Uncharacterized protein. (201 aa)
	C5167_006302	RRM domain-containing protein. (311 aa)
	C5167_023616	RRM domain-containing protein. (143 aa)
	C5167_025968	RRM domain-containing protein. (72 aa)
	C5167_025293	Uncharacterized protein. (92 aa)
	C5167_032962	Uncharacterized protein. (225 aa)
	C5167_032709	Uncharacterized protein. (270 aa)
	C5167_048329	Uncharacterized protein. (366 aa)
	C5167_049349	Uncharacterized protein. (315 aa)
	C5167_000069	RRM domain-containing protein. (249 aa)
	C5167_000753	Uncharacterized protein. (350 aa)
	C5167_042313	Uncharacterized protein. (223 aa)
	C5167_042622	Uncharacterized protein. (277 aa)
	C5167_042626	Uncharacterized protein. (174 aa)
	C5167_043331	RRM domain-containing protein. (280 aa)
	C5167_045615	RRM domain-containing protein. (115 aa)
	C5167_046309	RRM domain-containing protein. (104 aa)
	C5167_046308	RRM domain-containing protein. (97 aa)
	C5167_046659	Uncharacterized protein. (326 aa)
	C5167_047485	Uncharacterized protein. (317 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_000069	C5167_000753	A0A4Y7KR28	A0A4Y7KW82	RRM domain-containing protein.	Uncharacterized protein.	0.810
C5167_000069	C5167_006302	A0A4Y7KR28	A0A4Y7JGE1	RRM domain-containing protein.	RRM domain-containing protein.	0.445
C5167_000069	C5167_006434	A0A4Y7KR28	A0A4Y7JDB2	RRM domain-containing protein.	Uncharacterized protein.	0.650
C5167_000069	C5167_014439	A0A4Y7KR28	A0A4Y7J772	RRM domain-containing protein.	RRM domain-containing protein.	0.687
C5167_000069	C5167_020172	A0A4Y7KR28	A0A4Y7IVM0	RRM domain-containing protein.	Uncharacterized protein.	0.650
C5167_000069	C5167_020396	A0A4Y7KR28	A0A4Y7ISW8	RRM domain-containing protein.	Uncharacterized protein.	0.687
C5167_000069	C5167_020865	A0A4Y7KR28	A0A4Y7IXF8	RRM domain-containing protein.	RRM domain-containing protein.	0.911
C5167_000069	C5167_020975	A0A4Y7KR28	A0A4Y7IYH2	RRM domain-containing protein.	RRM domain-containing protein.	0.687
C5167_000069	C5167_023616	A0A4Y7KR28	A0A4Y7JP85	RRM domain-containing protein.	RRM domain-containing protein.	0.650
C5167_000069	C5167_032709	A0A4Y7KR28	A0A4Y7KB66	RRM domain-containing protein.	Uncharacterized protein.	0.627
C5167_000069	C5167_032962	A0A4Y7KR28	A0A4Y7KAJ5	RRM domain-containing protein.	Uncharacterized protein.	0.650
C5167_000069	C5167_042313	A0A4Y7KR28	A0A4Y7L461	RRM domain-containing protein.	Uncharacterized protein.	0.650
C5167_000069	C5167_043331	A0A4Y7KR28	A0A4Y7L815	RRM domain-containing protein.	RRM domain-containing protein.	0.687
C5167_000069	C5167_045615	A0A4Y7KR28	A0A4Y7LCV4	RRM domain-containing protein.	RRM domain-containing protein.	0.890
C5167_000069	C5167_046308	A0A4Y7KR28	A0A4Y7LDF3	RRM domain-containing protein.	RRM domain-containing protein.	0.810
C5167_000069	C5167_046309	A0A4Y7KR28	A0A4Y7LDE5	RRM domain-containing protein.	RRM domain-containing protein.	0.810
C5167_000069	C5167_046659	A0A4Y7KR28	A0A4Y7LEF2	RRM domain-containing protein.	Uncharacterized protein.	0.810
C5167_000069	C5167_047485	A0A4Y7KR28	A0A4Y7LGS0	RRM domain-containing protein.	Uncharacterized protein.	0.930
C5167_000069	C5167_048329	A0A4Y7KR28	A0A4Y7KLM2	RRM domain-containing protein.	Uncharacterized protein.	0.445
C5167_000069	C5167_049349	A0A4Y7KR28	A0A4Y7KPK4	RRM domain-containing protein.	Uncharacterized protein.	0.627