(29 nodes) Nuclear Envelope Breakdown network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_037809	Uncharacterized protein. (1976 aa)
	C5167_039201	Uncharacterized protein. (428 aa)
	C5167_039746	ANAPC4_WD40 domain-containing protein. (219 aa)
	C5167_040426	RRM Nup35-type domain-containing protein. (157 aa)
	C5167_017993	Uncharacterized protein. (163 aa)
	GATC	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family. (142 aa)
	C5167_018683	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (701 aa)
	C5167_019764	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (712 aa)
	C5167_020448	Uncharacterized protein. (467 aa)
	C5167_012639	Uncharacterized protein. (1765 aa)
	C5167_021230	Uncharacterized protein. (660 aa)
	C5167_012564	RanBD1 domain-containing protein. (62 aa)
	C5167_004552	Uncharacterized protein. (217 aa)
	C5167_022461	Retrotrans_gag domain-containing protein. (494 aa)
	C5167_007952	Uncharacterized protein. (461 aa)
	C5167_008841	ANAPC4_WD40 domain-containing protein. (219 aa)
	C5167_009236	Uncharacterized protein. (475 aa)
	C5167_010335	C2H2-type domain-containing protein. (456 aa)
	C5167_032831	Uncharacterized protein. (1470 aa)
	C5167_032610	DUF5311 domain-containing protein. (1469 aa)
	C5167_033152	Nup54 domain-containing protein. (416 aa)
	C5167_035143	Uncharacterized protein. (884 aa)
	C5167_049231	Uncharacterized protein. (1972 aa)
	C5167_050150	Nup54 domain-containing protein. (380 aa)
	C5167_002040	Uncharacterized protein. (1238 aa)
	C5167_003476	Uncharacterized protein. (812 aa)
	C5167_042596	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (345 aa)
	C5167_045479	Uncharacterized protein. (1261 aa)
	C5167_047183	Uncharacterized protein. (816 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002040	C5167_003476	A0A4Y7KZP3	A0A4Y7L2V4	Uncharacterized protein.	Uncharacterized protein.	0.932
C5167_002040	C5167_004552	A0A4Y7KZP3	A0A4Y7JBX8	Uncharacterized protein.	Uncharacterized protein.	0.941
C5167_002040	C5167_007952	A0A4Y7KZP3	A0A4Y7JW37	Uncharacterized protein.	Uncharacterized protein.	0.924
C5167_002040	C5167_008841	A0A4Y7KZP3	A0A4Y7JYT0	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.787
C5167_002040	C5167_009236	A0A4Y7KZP3	A0A4Y7K0R4	Uncharacterized protein.	Uncharacterized protein.	0.902
C5167_002040	C5167_010335	A0A4Y7KZP3	A0A4Y7K135	Uncharacterized protein.	C2H2-type domain-containing protein.	0.902
C5167_002040	C5167_012564	A0A4Y7KZP3	A0A4Y7J100	Uncharacterized protein.	RanBD1 domain-containing protein.	0.814
C5167_002040	C5167_012639	A0A4Y7KZP3	A0A4Y7IY02	Uncharacterized protein.	Uncharacterized protein.	0.941
C5167_002040	C5167_017993	A0A4Y7KZP3	A0A4Y7IPY4	Uncharacterized protein.	Uncharacterized protein.	0.941
C5167_002040	C5167_018683	A0A4Y7KZP3	A0A4Y7IRW7	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.931
C5167_002040	C5167_019764	A0A4Y7KZP3	A0A4Y7IT70	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.931
C5167_002040	C5167_020448	A0A4Y7KZP3	A0A4Y7IV66	Uncharacterized protein.	Uncharacterized protein.	0.924
C5167_002040	C5167_022461	A0A4Y7KZP3	A0A4Y7JLZ9	Uncharacterized protein.	Retrotrans_gag domain-containing protein.	0.924
C5167_002040	C5167_032610	A0A4Y7KZP3	A0A4Y7KBV6	Uncharacterized protein.	DUF5311 domain-containing protein.	0.978
C5167_002040	C5167_032831	A0A4Y7KZP3	A0A4Y7KBI2	Uncharacterized protein.	Uncharacterized protein.	0.961
C5167_002040	C5167_033152	A0A4Y7KZP3	A0A4Y7KDK3	Uncharacterized protein.	Nup54 domain-containing protein.	0.960
C5167_002040	C5167_035143	A0A4Y7KZP3	A0A4Y7KJ44	Uncharacterized protein.	Uncharacterized protein.	0.923
C5167_002040	C5167_037809	A0A4Y7KZP3	A0A4Y7IBH5	Uncharacterized protein.	Uncharacterized protein.	0.874
C5167_002040	C5167_039201	A0A4Y7KZP3	A0A4Y7IBN4	Uncharacterized protein.	Uncharacterized protein.	0.902
C5167_002040	C5167_039746	A0A4Y7KZP3	A0A4Y7IH95	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.787