58 items (Papaver somniferum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_035174	Pyr_redox_2 domain-containing protein. (529 aa)
	C5167_035202	Pex14_N domain-containing protein. (551 aa)
	C5167_048332	Uncharacterized protein. (266 aa)
	C5167_049878	Uncharacterized protein. (240 aa)
	C5167_050472	Uncharacterized protein. (264 aa)
	C5167_050186	Uncharacterized protein. (302 aa)
	C5167_049871	Uncharacterized protein. (234 aa)
	C5167_051084	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (176 aa)
	C5167_050335	Uncharacterized protein. (392 aa)
	C5167_051181	RING-type domain-containing protein. (357 aa)
	C5167_001731	Uncharacterized protein. (99 aa)
	C5167_002664	TPR_REGION domain-containing protein. (332 aa)
	C5167_002676	TPR_REGION domain-containing protein. (302 aa)
	C5167_042271	Pyr_redox_2 domain-containing protein. (476 aa)
	C5167_043486	Uncharacterized protein. (128 aa)
	C5167_044009	Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family. (342 aa)
	C5167_047077	Uncharacterized protein. (293 aa)
	C5167_036312	WD_REPEATS_REGION domain-containing protein. (317 aa)
	C5167_036683	Uncharacterized protein. (1075 aa)
	C5167_038748	3-hydroxy-3-methylglutaryl coenzyme A reductase. (592 aa)
	C5167_037868	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family. (312 aa)
	C5167_038596	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (531 aa)
	C5167_039982	Uncharacterized protein. (571 aa)
	C5167_039182	Uncharacterized protein. (274 aa)
	C5167_039638	ABC transporter domain-containing protein. (245 aa)
	C5167_041298	Uncharacterized protein. (109 aa)
	C5167_041303	Uncharacterized protein. (173 aa)
	C5167_017776	RING-type domain-containing protein. (395 aa)
	C5167_018270	Uncharacterized protein. (131 aa)
	C5167_019641	Uncharacterized protein. (370 aa)
	C5167_021033	RING-type domain-containing protein. (395 aa)
	C5167_012337	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (373 aa)
	C5167_013964	Uncharacterized protein. (238 aa)
	C5167_013665	3-hydroxy-3-methylglutaryl coenzyme A reductase. (601 aa)
	C5167_013179	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (506 aa)
	C5167_013453	Uncharacterized protein. (1385 aa)
	C5167_014089	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family. (288 aa)
	C5167_014222	Uncharacterized protein. (117 aa)
	C5167_015707	Uncharacterized protein. (221 aa)
	C5167_015715	MBOAT_2 domain-containing protein. (722 aa)
	C5167_004540	MBOAT_2 domain-containing protein. (336 aa)
	C5167_006291	Uncharacterized protein. (235 aa)
	C5167_006316	Uncharacterized protein. (272 aa)
	C5167_006309	Uncharacterized protein. (312 aa)
	C5167_024665	Uncharacterized protein. (245 aa)
	C5167_024300	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (503 aa)
	C5167_024428	Uncharacterized protein. (1346 aa)
	C5167_025953	Uncharacterized protein. (314 aa)
	C5167_025643	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (348 aa)
	C5167_009254	Uncharacterized protein. (274 aa)
	C5167_009682	TPR_REGION domain-containing protein. (757 aa)
	C5167_010984	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (530 aa)
	C5167_010412	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family. (295 aa)
	C5167_011285	ABC transporter domain-containing protein. (349 aa)
	C5167_011132	3-hydroxy-3-methylglutaryl coenzyme A reductase. (592 aa)
	C5167_032298	Uncharacterized protein. (255 aa)
	C5167_033248	Uncharacterized protein. (235 aa)
	C5167_033246	Uncharacterized protein. (388 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001731	C5167_006291	A0A4Y7KW33	A0A4Y7JCY0	Uncharacterized protein.	Uncharacterized protein.	0.672
C5167_001731	C5167_006309	A0A4Y7KW33	A0A4Y7JH86	Uncharacterized protein.	Uncharacterized protein.	0.672
C5167_001731	C5167_006316	A0A4Y7KW33	A0A4Y7JD43	Uncharacterized protein.	Uncharacterized protein.	0.672
C5167_001731	C5167_009682	A0A4Y7KW33	A0A4Y7K172	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.468
C5167_001731	C5167_011285	A0A4Y7KW33	A0A4Y7K5H6	Uncharacterized protein.	ABC transporter domain-containing protein.	0.607
C5167_001731	C5167_012337	A0A4Y7KW33	A0A4Y7IY01	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.626
C5167_001731	C5167_013453	A0A4Y7KW33	A0A4Y7J3T7	Uncharacterized protein.	Uncharacterized protein.	0.607
C5167_001731	C5167_013964	A0A4Y7KW33	A0A4Y7J1V5	Uncharacterized protein.	Uncharacterized protein.	0.672
C5167_001731	C5167_014222	A0A4Y7KW33	A0A4Y7J6L5	Uncharacterized protein.	Uncharacterized protein.	0.778
C5167_001731	C5167_017776	A0A4Y7KW33	A0A4Y7IKE7	Uncharacterized protein.	RING-type domain-containing protein.	0.407
C5167_001731	C5167_018270	A0A4Y7KW33	A0A4Y7ILT3	Uncharacterized protein.	Uncharacterized protein.	0.672
C5167_001731	C5167_021033	A0A4Y7KW33	A0A4Y7IV86	Uncharacterized protein.	RING-type domain-containing protein.	0.407
C5167_001731	C5167_024428	A0A4Y7KW33	A0A4Y7JRI3	Uncharacterized protein.	Uncharacterized protein.	0.607
C5167_001731	C5167_025643	A0A4Y7KW33	A0A4Y7JVX3	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.626
C5167_001731	C5167_032298	A0A4Y7KW33	A0A4Y7K779	Uncharacterized protein.	Uncharacterized protein.	0.810
C5167_001731	C5167_033246	A0A4Y7KW33	A0A4Y7KD78	Uncharacterized protein.	Uncharacterized protein.	0.804
C5167_001731	C5167_035202	A0A4Y7KW33	A0A4Y7KJC2	Uncharacterized protein.	Pex14_N domain-containing protein.	0.778
C5167_001731	C5167_036312	A0A4Y7KW33	A0A4Y7I3Q0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.501
C5167_001731	C5167_036683	A0A4Y7KW33	A0A4Y7I8K1	Uncharacterized protein.	Uncharacterized protein.	0.529
C5167_001731	C5167_039638	A0A4Y7KW33	A0A4Y7IGY2	Uncharacterized protein.	ABC transporter domain-containing protein.	0.607