(22 nodes) Response to far red light network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_020187	ABC transporter domain-containing protein. (311 aa)
	C5167_017566	Photolyase/cryptochrome alpha/beta domain-containing protein. (711 aa)
	C5167_040832	BZIP domain-containing protein. (133 aa)
	C5167_047644	Uncharacterized protein. (553 aa)
	C5167_036814	BZIP domain-containing protein. (122 aa)
	C5167_038811	Uncharacterized protein. (531 aa)
	C5167_017252	BZIP domain-containing protein. (215 aa)
	C5167_046274	ANK_REP_REGION domain-containing protein. (174 aa)
	C5167_045527	Amidohydro_3 domain-containing protein. (553 aa)
	C5167_042222	Uncharacterized protein. (328 aa)
	C5167_001876	Amidohydro_3 domain-containing protein. (402 aa)
	C5167_003158	ANK_REP_REGION domain-containing protein. (173 aa)
	C5167_003109	Uncharacterized protein. (230 aa)
	C5167_002516	Uncharacterized protein. (499 aa)
	C5167_049414	ANK_REP_REGION domain-containing protein. (135 aa)
	C5167_033838	Uncharacterized protein. (232 aa)
	C5167_032605	ANK_REP_REGION domain-containing protein. (176 aa)
	C5167_011251	Uncharacterized protein. (531 aa)
	C5167_025871	ANK_REP_REGION domain-containing protein. (86 aa)
	C5167_014353	Uncharacterized protein. (385 aa)
	C5167_012562	BZIP domain-containing protein. (170 aa)
	C5167_020601	ABC transporter domain-containing protein. (311 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002516	C5167_017566	A0A4Y7KY98	A0A4Y7IMW4	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.471
C5167_003158	C5167_047644	A0A4Y7L090	A0A4Y7LL99	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.406
C5167_012562	C5167_017252	A0A4Y7IXT2	A0A4Y7IIX1	BZIP domain-containing protein.	BZIP domain-containing protein.	0.973
C5167_012562	C5167_017566	A0A4Y7IXT2	A0A4Y7IMW4	BZIP domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.609
C5167_017252	C5167_012562	A0A4Y7IIX1	A0A4Y7IXT2	BZIP domain-containing protein.	BZIP domain-containing protein.	0.973
C5167_017252	C5167_017566	A0A4Y7IIX1	A0A4Y7IMW4	BZIP domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.632
C5167_017252	C5167_036814	A0A4Y7IIX1	A0A4Y7I8Z0	BZIP domain-containing protein.	BZIP domain-containing protein.	0.743
C5167_017252	C5167_040832	A0A4Y7IIX1	A0A4Y7IJJ8	BZIP domain-containing protein.	BZIP domain-containing protein.	0.743
C5167_017252	C5167_047644	A0A4Y7IIX1	A0A4Y7LL99	BZIP domain-containing protein.	Uncharacterized protein.	0.567
C5167_017566	C5167_002516	A0A4Y7IMW4	A0A4Y7KY98	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.471
C5167_017566	C5167_012562	A0A4Y7IMW4	A0A4Y7IXT2	Photolyase/cryptochrome alpha/beta domain-containing protein.	BZIP domain-containing protein.	0.609
C5167_017566	C5167_017252	A0A4Y7IMW4	A0A4Y7IIX1	Photolyase/cryptochrome alpha/beta domain-containing protein.	BZIP domain-containing protein.	0.632
C5167_017566	C5167_036814	A0A4Y7IMW4	A0A4Y7I8Z0	Photolyase/cryptochrome alpha/beta domain-containing protein.	BZIP domain-containing protein.	0.609
C5167_017566	C5167_040832	A0A4Y7IMW4	A0A4Y7IJJ8	Photolyase/cryptochrome alpha/beta domain-containing protein.	BZIP domain-containing protein.	0.609
C5167_017566	C5167_047644	A0A4Y7IMW4	A0A4Y7LL99	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.549
C5167_020187	C5167_047644	A0A4Y7ISB0	A0A4Y7LL99	ABC transporter domain-containing protein.	Uncharacterized protein.	0.424
C5167_020601	C5167_047644	A0A4Y7IWK5	A0A4Y7LL99	ABC transporter domain-containing protein.	Uncharacterized protein.	0.424
C5167_025871	C5167_047644	A0A4Y7JU79	A0A4Y7LL99	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.406
C5167_032605	C5167_047644	A0A4Y7K9L2	A0A4Y7LL99	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.406
C5167_036814	C5167_017252	A0A4Y7I8Z0	A0A4Y7IIX1	BZIP domain-containing protein.	BZIP domain-containing protein.	0.743