(69 nodes) Regulation of transcription elongation from RNA polymerase II promoter network (Papaver somniferum)

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_050326	EAF domain-containing protein. (399 aa)
	C5167_050041	HTH_44 domain-containing protein. (359 aa)
	C5167_050520	Protein kinase domain-containing protein. (134 aa)
	C5167_000882	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (434 aa)
	C5167_000854	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (536 aa)
	C5167_001779	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (115 aa)
	C5167_003449	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1649 aa)
	C5167_043014	Protein kinase domain-containing protein. (437 aa)
	C5167_043389	Protein kinase domain-containing protein. (564 aa)
	C5167_043219	Protein kinase domain-containing protein. (692 aa)
	C5167_045996	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1619 aa)
	C5167_046412	Uncharacterized protein. (472 aa)
	C5167_047043	Uncharacterized protein. (407 aa)
	C5167_047381	FACT-Spt16_Nlob domain-containing protein. (560 aa)
	C5167_047038	Uncharacterized protein. (408 aa)
	C5167_047181	Uncharacterized protein. (314 aa)
	C5167_047383	Uncharacterized protein. (518 aa)
	C5167_038326	Protein kinase domain-containing protein. (83 aa)
	C5167_038118	Rtt106 domain-containing protein. (433 aa)
	C5167_039476	Protein kinase domain-containing protein. (740 aa)
	C5167_039750	Protein kinase domain-containing protein. (513 aa)
	C5167_017560	Protein kinase domain-containing protein. (507 aa)
	C5167_017824	Uncharacterized protein. (63 aa)
	C5167_019034	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (541 aa)
	C5167_019334	Protein kinase domain-containing protein. (689 aa)
	C5167_018718	Uncharacterized protein. (218 aa)
	C5167_018885	Protein kinase domain-containing protein. (484 aa)
	C5167_019140	Protein kinase domain-containing protein. (366 aa)
	C5167_019603	Uncharacterized protein. (163 aa)
	C5167_020332	Protein kinase domain-containing protein. (578 aa)
	C5167_020348	Protein kinase domain-containing protein. (403 aa)
	C5167_012275	SWIM-type domain-containing protein. (1782 aa)
	C5167_012845	Rtt106 domain-containing protein. (409 aa)
	C5167_013409	Protein kinase domain-containing protein. (745 aa)
	C5167_012479	Uncharacterized protein. (114 aa)
	C5167_012892	Protein kinase domain-containing protein. (720 aa)
	C5167_014386	Protein kinase domain-containing protein. (576 aa)
	C5167_014287	Rtt106 domain-containing protein. (376 aa)
	C5167_015524	Protein kinase domain-containing protein. (511 aa)
	C5167_005863	Protein kinase domain-containing protein. (656 aa)
	C5167_006009	Uncharacterized protein. (209 aa)
	C5167_005812	Uncharacterized protein. (633 aa)
	C5167_006755	Protein kinase domain-containing protein. (595 aa)
	C5167_022303	Protein kinase domain-containing protein. (599 aa)
	C5167_022728	Uncharacterized protein. (634 aa)
	C5167_023607	Uncharacterized protein. (332 aa)
	C5167_023962	Protein kinase domain-containing protein. (705 aa)
	C5167_024399	Protein kinase domain-containing protein. (783 aa)
	C5167_025532	Uncharacterized protein. (1063 aa)
	C5167_009386	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (115 aa)
	C5167_009059	Protein kinase domain-containing protein. (748 aa)
	C5167_009803	Uncharacterized protein. (619 aa)
	C5167_008845	Protein kinase domain-containing protein. (431 aa)
	C5167_009802	Uncharacterized protein. (558 aa)
	C5167_010879	YqgF domain-containing protein. (63 aa)
	C5167_032021	Rtt106 domain-containing protein. (439 aa)
	C5167_032512	Protein kinase domain-containing protein. (496 aa)
	C5167_033409	EAF domain-containing protein. (339 aa)
	C5167_032128	Uncharacterized protein. (304 aa)
	C5167_033260	SPT6_acidic domain-containing protein. (149 aa)
	C5167_034936	Protein kinase domain-containing protein. (725 aa)
	C5167_035485	Uncharacterized protein. (172 aa)
	C5167_035669	Protein kinase domain-containing protein. (722 aa)
	C5167_035582	Rtt106 domain-containing protein. (355 aa)
	C5167_035484	Uncharacterized protein. (232 aa)
	C5167_035473	Uncharacterized protein. (526 aa)
	C5167_035383	Uncharacterized protein. (656 aa)
	C5167_035512	Uncharacterized protein. (492 aa)
	C5167_048867	Protein kinase domain-containing protein. (719 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_000854	C5167_001779	A0A4Y7KXQ3	A0A4Y7L056	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.670
C5167_000854	C5167_009386	A0A4Y7KXQ3	A0A4Y7JYN7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.670
C5167_000854	C5167_019034	A0A4Y7KXQ3	A0A4Y7IP00	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.900
C5167_000854	C5167_033409	A0A4Y7KXQ3	A0A4Y7KA56	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	EAF domain-containing protein.	0.650
C5167_000854	C5167_050326	A0A4Y7KXQ3	A0A4Y7KPR3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	EAF domain-containing protein.	0.650
C5167_000882	C5167_001779	A0A4Y7KXC7	A0A4Y7L056	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.670
C5167_000882	C5167_009386	A0A4Y7KXC7	A0A4Y7JYN7	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.670
C5167_000882	C5167_033409	A0A4Y7KXC7	A0A4Y7KA56	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	EAF domain-containing protein.	0.650
C5167_000882	C5167_050326	A0A4Y7KXC7	A0A4Y7KPR3	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	EAF domain-containing protein.	0.650
C5167_001779	C5167_000854	A0A4Y7L056	A0A4Y7KXQ3	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.670
C5167_001779	C5167_000882	A0A4Y7L056	A0A4Y7KXC7	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.670
C5167_001779	C5167_003449	A0A4Y7L056	A0A4Y7L3P0	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.892
C5167_001779	C5167_005812	A0A4Y7L056	A0A4Y7JFU5	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Uncharacterized protein.	0.954
C5167_001779	C5167_005863	A0A4Y7L056	A0A4Y7JEY1	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Protein kinase domain-containing protein.	0.521
C5167_001779	C5167_006009	A0A4Y7L056	A0A4Y7JFC3	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Uncharacterized protein.	0.777
C5167_001779	C5167_006755	A0A4Y7L056	A0A4Y7JG00	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Protein kinase domain-containing protein.	0.521
C5167_001779	C5167_008845	A0A4Y7L056	A0A4Y7JZM5	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Protein kinase domain-containing protein.	0.521
C5167_001779	C5167_009059	A0A4Y7L056	A0A4Y7JZE6	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Protein kinase domain-containing protein.	0.521
C5167_001779	C5167_009802	A0A4Y7L056	A0A4Y7JZX1	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Uncharacterized protein.	0.777
C5167_001779	C5167_009803	A0A4Y7L056	A0A4Y7JZL0	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	Uncharacterized protein.	0.777