(6 nodes) GID complex network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_004400	Uncharacterized protein. (108 aa)
	C5167_033842	Uncharacterized protein. (214 aa)
	C5167_001639	Uncharacterized protein. (659 aa)
	C5167_003129	Uncharacterized protein. (214 aa)
	C5167_046301	CTLH domain-containing protein. (411 aa)
	C5167_045848	Uncharacterized protein. (497 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001639	C5167_004400	A0A4Y7KZ79	A0A4Y7J9D7	Uncharacterized protein.	Uncharacterized protein.	0.930
C5167_001639	C5167_046301	A0A4Y7KZ79	A0A4Y7LDD4	Uncharacterized protein.	CTLH domain-containing protein.	0.930
C5167_004400	C5167_001639	A0A4Y7J9D7	A0A4Y7KZ79	Uncharacterized protein.	Uncharacterized protein.	0.930
C5167_004400	C5167_045848	A0A4Y7J9D7	A0A4Y7LEE1	Uncharacterized protein.	Uncharacterized protein.	0.930
C5167_045848	C5167_004400	A0A4Y7LEE1	A0A4Y7J9D7	Uncharacterized protein.	Uncharacterized protein.	0.930
C5167_045848	C5167_046301	A0A4Y7LEE1	A0A4Y7LDD4	Uncharacterized protein.	CTLH domain-containing protein.	0.930
C5167_046301	C5167_001639	A0A4Y7LDD4	A0A4Y7KZ79	CTLH domain-containing protein.	Uncharacterized protein.	0.930
C5167_046301	C5167_045848	A0A4Y7LDD4	A0A4Y7LEE1	CTLH domain-containing protein.	Uncharacterized protein.	0.930