(24 nodes) Anthocyanin-containing compound metabolic process network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_023882	Uncharacterized protein. (290 aa)
	C5167_043179	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (480 aa)
	C5167_003789	Uncharacterized protein. (118 aa)
	C5167_003785	Uncharacterized protein. (225 aa)
	C5167_048577	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (434 aa)
	C5167_034403	FPL domain-containing protein. (859 aa)
	C5167_033914	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (450 aa)
	C5167_032504	Uncharacterized protein. (465 aa)
	C5167_031833	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (465 aa)
	C5167_010427	Uncharacterized protein; Belongs to the UDP-glycosyltransferase family. (795 aa)
	C5167_009460	Uncharacterized protein. (703 aa)
	C5167_008965	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (468 aa)
	C5167_025889	Calreticulin. (452 aa)
	C5167_024401	Uncharacterized protein. (1662 aa)
	C5167_023881	Uncharacterized protein. (428 aa)
	C5167_004915	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (430 aa)
	C5167_015562	FPL domain-containing protein. (408 aa)
	C5167_014863	Uncharacterized protein; Belongs to the P(II) protein family. (204 aa)
	C5167_013460	Glyco_transf_24 domain-containing protein. (686 aa)
	C5167_019871	Uncharacterized protein. (190 aa)
	C5167_017566	Photolyase/cryptochrome alpha/beta domain-containing protein. (711 aa)
	C5167_039537	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (468 aa)
	C5167_040640	Calreticulin. (429 aa)
	C5167_039162	Uncharacterized protein. (689 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_003785	C5167_013460	A0A4Y7L4L3	A0A4Y7J3H4	Uncharacterized protein.	Glyco_transf_24 domain-containing protein.	0.478
C5167_003785	C5167_024401	A0A4Y7L4L3	A0A4Y7JRJ2	Uncharacterized protein.	Uncharacterized protein.	0.478
C5167_004915	C5167_048577	A0A4Y7JCH7	A0A4Y7KJQ6	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.900
C5167_008965	C5167_010427	A0A4Y7JXH5	A0A4Y7K464	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein; Belongs to the UDP-glycosyltransferase family.	0.902
C5167_008965	C5167_023882	A0A4Y7JXH5	A0A4Y7JR21	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein.	0.900
C5167_008965	C5167_031833	A0A4Y7JXH5	A0A4Y7K8F3	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.900
C5167_008965	C5167_032504	A0A4Y7JXH5	A0A4Y7K9M7	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein.	0.900
C5167_008965	C5167_039537	A0A4Y7JXH5	A0A4Y7IFV9	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.900
C5167_009460	C5167_017566	A0A4Y7K1D8	A0A4Y7IMW4	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.983
C5167_009460	C5167_039162	A0A4Y7K1D8	A0A4Y7IBK0	Uncharacterized protein.	Uncharacterized protein.	0.900
C5167_010427	C5167_008965	A0A4Y7K464	A0A4Y7JXH5	Uncharacterized protein; Belongs to the UDP-glycosyltransferase family.	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.902
C5167_010427	C5167_023882	A0A4Y7K464	A0A4Y7JR21	Uncharacterized protein; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein.	0.900
C5167_010427	C5167_031833	A0A4Y7K464	A0A4Y7K8F3	Uncharacterized protein; Belongs to the UDP-glycosyltransferase family.	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.900
C5167_010427	C5167_032504	A0A4Y7K464	A0A4Y7K9M7	Uncharacterized protein; Belongs to the UDP-glycosyltransferase family.	Uncharacterized protein.	0.900
C5167_010427	C5167_039537	A0A4Y7K464	A0A4Y7IFV9	Uncharacterized protein; Belongs to the UDP-glycosyltransferase family.	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family.	0.902
C5167_013460	C5167_003785	A0A4Y7J3H4	A0A4Y7L4L3	Glyco_transf_24 domain-containing protein.	Uncharacterized protein.	0.478
C5167_013460	C5167_019871	A0A4Y7J3H4	A0A4Y7IUI3	Glyco_transf_24 domain-containing protein.	Uncharacterized protein.	0.478
C5167_013460	C5167_025889	A0A4Y7J3H4	A0A4Y7JWL7	Glyco_transf_24 domain-containing protein.	Calreticulin.	0.478
C5167_013460	C5167_040640	A0A4Y7J3H4	A0A4Y7IFJ4	Glyco_transf_24 domain-containing protein.	Calreticulin.	0.478
C5167_017566	C5167_009460	A0A4Y7IMW4	A0A4Y7K1D8	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.983