(36 nodes) Regulation of vesicle-mediated transport network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_001535	Uncharacterized protein. (197 aa)
	C5167_046783	Uncharacterized protein. (264 aa)
	C5167_044388	Uncharacterized protein. (155 aa)
	C5167_042413	Uncharacterized protein. (661 aa)
	C5167_002900	Uncharacterized protein. (186 aa)
	C5167_002590	Uncharacterized protein. (848 aa)
	C5167_002589	Uncharacterized protein. (206 aa)
	C5167_001203	WD_REPEATS_REGION domain-containing protein. (405 aa)
	C5167_001193	Uncharacterized protein. (205 aa)
	C5167_001334	Uncharacterized protein. (246 aa)
	C5167_001309	Uncharacterized protein. (156 aa)
	C5167_001228	Uncharacterized protein. (192 aa)
	C5167_050683	Uncharacterized protein. (427 aa)
	C5167_049930	Uncharacterized protein. (218 aa)
	C5167_033768	WD_REPEATS_REGION domain-containing protein. (405 aa)
	C5167_033757	Uncharacterized protein. (70 aa)
	C5167_032234	Uncharacterized protein. (305 aa)
	C5167_033012	Uncharacterized protein. (796 aa)
	C5167_031675	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	C5167_011671	Uncharacterized protein. (158 aa)
	C5167_011078	Lgl_C domain-containing protein. (1025 aa)
	C5167_009926	Uncharacterized protein. (156 aa)
	C5167_009137	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (710 aa)
	C5167_024451	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (566 aa)
	C5167_022063	Uncharacterized protein. (796 aa)
	C5167_006971	Uncharacterized protein. (222 aa)
	C5167_005485	WD_REPEATS_REGION domain-containing protein. (405 aa)
	C5167_015100	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	C5167_013485	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (428 aa)
	C5167_013282	Uncharacterized protein. (912 aa)
	C5167_013490	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (125 aa)
	C5167_012367	SEC7 domain-containing protein. (1769 aa)
	C5167_017074	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	C5167_038688	Lgl_C domain-containing protein. (1026 aa)
	C5167_039458	Uncharacterized protein; Belongs to the CTL (choline transporter-like) family. (298 aa)
	C5167_036451	Uncharacterized protein. (185 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001203	C5167_009926	A0A4Y7KYB5	A0A4Y7JZY7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.923
C5167_001203	C5167_015100	A0A4Y7KYB5	A0A4Y7J9F1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.923
C5167_001203	C5167_017074	A0A4Y7KYB5	A0A4Y7ILQ2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.923
C5167_001203	C5167_031675	A0A4Y7KYB5	A0A4Y7K8W4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.923
C5167_001203	C5167_044388	A0A4Y7KYB5	A0A4Y7LCB7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.923
C5167_001228	C5167_009926	A0A4Y7KUQ9	A0A4Y7JZY7	Uncharacterized protein.	Uncharacterized protein.	0.790
C5167_001228	C5167_015100	A0A4Y7KUQ9	A0A4Y7J9F1	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.790
C5167_001228	C5167_017074	A0A4Y7KUQ9	A0A4Y7ILQ2	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.790
C5167_001228	C5167_031675	A0A4Y7KUQ9	A0A4Y7K8W4	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.790
C5167_001228	C5167_044388	A0A4Y7KUQ9	A0A4Y7LCB7	Uncharacterized protein.	Uncharacterized protein.	0.790
C5167_001309	C5167_009926	A0A4Y7KUV6	A0A4Y7JZY7	Uncharacterized protein.	Uncharacterized protein.	0.790
C5167_001309	C5167_015100	A0A4Y7KUV6	A0A4Y7J9F1	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.790
C5167_001309	C5167_017074	A0A4Y7KUV6	A0A4Y7ILQ2	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.790
C5167_001309	C5167_031675	A0A4Y7KUV6	A0A4Y7K8W4	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.790
C5167_001309	C5167_044388	A0A4Y7KUV6	A0A4Y7LCB7	Uncharacterized protein.	Uncharacterized protein.	0.790
C5167_001535	C5167_006971	A0A4Y7KRY5	A0A4Y7JFT3	Uncharacterized protein.	Uncharacterized protein.	0.900
C5167_001535	C5167_050683	A0A4Y7KRY5	A0A4Y7KSV8	Uncharacterized protein.	Uncharacterized protein.	0.901
C5167_005485	C5167_009926	A0A4Y7JCD7	A0A4Y7JZY7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.923
C5167_005485	C5167_015100	A0A4Y7JCD7	A0A4Y7J9F1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.923
C5167_005485	C5167_017074	A0A4Y7JCD7	A0A4Y7ILQ2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.923