(82 nodes) RNA phosphodiester bond hydrolysis, exonucleolytic network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_045712	HRDC domain-containing protein. (957 aa)
	C5167_038726	Uncharacterized protein. (968 aa)
	C5167_037757	XRN_M domain-containing protein. (555 aa)
	C5167_039231	Uncharacterized protein. (92 aa)
	C5167_039048	Uncharacterized protein. (690 aa)
	C5167_039288	3'-5' exonuclease domain-containing protein. (993 aa)
	C5167_040415	Uncharacterized protein. (429 aa)
	C5167_040524	Exonuclease domain-containing protein. (293 aa)
	C5167_040766	Uncharacterized protein. (762 aa)
	C5167_017837	Uncharacterized protein. (133 aa)
	C5167_017748	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1123 aa)
	C5167_018793	Uncharacterized protein. (641 aa)
	C5167_019309	Exonuclease domain-containing protein. (334 aa)
	C5167_019607	Uncharacterized protein. (210 aa)
	C5167_020616	Uncharacterized protein. (197 aa)
	C5167_019427	XRN_N domain-containing protein. (223 aa)
	C5167_020757	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (925 aa)
	C5167_012107	Uncharacterized protein. (216 aa)
	C5167_011918	XRN_N domain-containing protein. (249 aa)
	C5167_014041	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1030 aa)
	C5167_014181	Uncharacterized protein. (125 aa)
	C5167_005605	Endo/exonuclease/phosphatase domain-containing protein. (204 aa)
	C5167_005583	Endo/exonuclease/phosphatase domain-containing protein. (167 aa)
	C5167_006465	KH_dom_type_1 domain-containing protein. (242 aa)
	C5167_007147	Uncharacterized protein. (205 aa)
	C5167_007148	XRN_M domain-containing protein. (92 aa)
	C5167_022944	Endo/exonuclease/phosphatase domain-containing protein. (204 aa)
	C5167_022955	Uncharacterized protein. (176 aa)
	C5167_022905	Endo/exonuclease/phosphatase domain-containing protein. (462 aa)
	C5167_023691	Uncharacterized protein. (93 aa)
	C5167_022865	Uncharacterized protein. (310 aa)
	C5167_022845	XRN_M domain-containing protein. (196 aa)
	C5167_023740	Uncharacterized protein. (349 aa)
	C5167_023658	Uncharacterized protein. (287 aa)
	C5167_025407	Uncharacterized protein. (224 aa)
	C5167_025273	Uncharacterized protein. (452 aa)
	C5167_025815	Endo/exonuclease/phosphatase domain-containing protein. (871 aa)
	C5167_009353	3'-5' exonuclease domain-containing protein. (928 aa)
	C5167_008181	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (976 aa)
	C5167_009557	Uncharacterized protein. (346 aa)
	C5167_010054	SANTA domain-containing protein. (749 aa)
	C5167_010328	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (631 aa)
	C5167_011617	Uncharacterized protein. (125 aa)
	C5167_032401	RAI1 domain-containing protein. (431 aa)
	C5167_032929	Uncharacterized protein. (187 aa)
	C5167_032603	Endo/exonuclease/phosphatase domain-containing protein. (515 aa)
	C5167_034113	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (302 aa)
	C5167_032052	Uncharacterized protein. (93 aa)
	C5167_032426	Uncharacterized protein. (150 aa)
	C5167_032589	Endo/exonuclease/phosphatase domain-containing protein. (410 aa)
	C5167_032852	Uncharacterized protein. (93 aa)
	C5167_035251	S1 motif domain-containing protein. (1050 aa)
	C5167_049397	Endo/exonuclease/phosphatase domain-containing protein. (388 aa)
	C5167_048941	Uncharacterized protein. (442 aa)
	C5167_050005	RAI1 domain-containing protein. (431 aa)
	C5167_049639	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (712 aa)
	C5167_049379	Uncharacterized protein. (189 aa)
	C5167_050605	Uncharacterized protein. (173 aa)
	C5167_049995	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (282 aa)
	C5167_049923	Uncharacterized protein. (93 aa)
	C5167_001042	RNB domain-containing protein. (801 aa)
	C5167_000950	Uncharacterized protein. (145 aa)
	C5167_000486	XRN_N domain-containing protein. (67 aa)
	C5167_001846	Exonuclease domain-containing protein. (436 aa)
	C5167_002025	Uncharacterized protein. (876 aa)
	C5167_001371	XRN_M domain-containing protein. (238 aa)
	C5167_002529	Uncharacterized protein. (273 aa)
	C5167_001992	3'-5' exonuclease domain-containing protein. (385 aa)
	C5167_042191	Uncharacterized protein. (233 aa)
	C5167_003441	Uncharacterized protein. (606 aa)
	C5167_043724	S1 motif domain-containing protein. (1050 aa)
	C5167_043180	Exonuclease domain-containing protein. (363 aa)
	C5167_043436	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (925 aa)
	C5167_043701	Uncharacterized protein. (547 aa)
	C5167_045691	S1 motif domain-containing protein. (894 aa)
	C5167_046184	Uncharacterized protein. (95 aa)
	C5167_045553	Exonuclease domain-containing protein. (440 aa)
	C5167_046020	Uncharacterized protein. (606 aa)
	C5167_046548	Uncharacterized protein. (154 aa)
	C5167_046903	Uncharacterized protein. (280 aa)
	C5167_047801	Uncharacterized protein. (578 aa)
	C5167_047604	XRN_M domain-containing protein. (223 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_000486	C5167_032401	A0A4Y7KVF2	A0A4Y7K8N9	XRN_N domain-containing protein.	RAI1 domain-containing protein.	0.693
C5167_000486	C5167_050005	A0A4Y7KVF2	A0A4Y7KNT8	XRN_N domain-containing protein.	RAI1 domain-containing protein.	0.693
C5167_000950	C5167_002529	A0A4Y7KVC0	A0A4Y7KYF5	Uncharacterized protein.	Uncharacterized protein.	0.654
C5167_000950	C5167_022865	A0A4Y7KVC0	A0A4Y7JM58	Uncharacterized protein.	Uncharacterized protein.	0.654
C5167_000950	C5167_023658	A0A4Y7KVC0	A0A4Y7JPM8	Uncharacterized protein.	Uncharacterized protein.	0.654
C5167_000950	C5167_023740	A0A4Y7KVC0	A0A4Y7JN42	Uncharacterized protein.	Uncharacterized protein.	0.654
C5167_000950	C5167_032929	A0A4Y7KVC0	A0A4Y7K8U6	Uncharacterized protein.	Uncharacterized protein.	0.654
C5167_000950	C5167_046903	A0A4Y7KVC0	A0A4Y7LHX2	Uncharacterized protein.	Uncharacterized protein.	0.654
C5167_001042	C5167_001992	A0A4Y7KV83	A0A4Y7KYF9	RNB domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.947
C5167_001042	C5167_002025	A0A4Y7KV83	A0A4Y7KWT6	RNB domain-containing protein.	Uncharacterized protein.	0.711
C5167_001042	C5167_006465	A0A4Y7KV83	A0A4Y7JGI5	RNB domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.974
C5167_001042	C5167_007147	A0A4Y7KV83	A0A4Y7JH25	RNB domain-containing protein.	Uncharacterized protein.	0.975
C5167_001042	C5167_009353	A0A4Y7KV83	A0A4Y7JX62	RNB domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.950
C5167_001042	C5167_009557	A0A4Y7KV83	A0A4Y7K1N4	RNB domain-containing protein.	Uncharacterized protein.	0.976
C5167_001042	C5167_011617	A0A4Y7KV83	A0A4Y7K4T5	RNB domain-containing protein.	Uncharacterized protein.	0.975
C5167_001042	C5167_014181	A0A4Y7KV83	A0A4Y7J6R3	RNB domain-containing protein.	Uncharacterized protein.	0.987
C5167_001042	C5167_017837	A0A4Y7KV83	A0A4Y7INW7	RNB domain-containing protein.	Uncharacterized protein.	0.621
C5167_001042	C5167_018793	A0A4Y7KV83	A0A4Y7IRE7	RNB domain-containing protein.	Uncharacterized protein.	0.422
C5167_001042	C5167_019607	A0A4Y7KV83	A0A4Y7ITR0	RNB domain-containing protein.	Uncharacterized protein.	0.422
C5167_001042	C5167_035251	A0A4Y7KV83	A0A4Y7KJF0	RNB domain-containing protein.	S1 motif domain-containing protein.	0.697