(13 nodes) Exon-exon junction complex network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_013363	Mago-bind domain-containing protein. (213 aa)
	C5167_049932	Uncharacterized protein. (150 aa)
	C5167_050707	Btz domain-containing protein. (671 aa)
	C5167_003229	Uncharacterized protein. (130 aa)
	C5167_003020	Uncharacterized protein. (199 aa)
	C5167_046354	MIF4G domain-containing protein. (237 aa)
	C5167_046182	RRM domain-containing protein. (188 aa)
	C5167_036700	RRM domain-containing protein. (203 aa)
	C5167_013403	Smg4_UPF3 domain-containing protein. (580 aa)
	C5167_024382	Smg4_UPF3 domain-containing protein. (621 aa)
	C5167_011395	RRM domain-containing protein. (203 aa)
	C5167_032434	Uncharacterized protein. (132 aa)
	C5167_034865	Btz domain-containing protein. (700 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_003020	C5167_003229	A0A4Y7L1G6	A0A4Y7L0D6	Uncharacterized protein.	Uncharacterized protein.	0.971
C5167_003020	C5167_011395	A0A4Y7L1G6	A0A4Y7K2W9	Uncharacterized protein.	RRM domain-containing protein.	0.971
C5167_003020	C5167_013363	A0A4Y7L1G6	A0A4Y7J3J3	Uncharacterized protein.	Mago-bind domain-containing protein.	0.540
C5167_003020	C5167_013403	A0A4Y7L1G6	A0A4Y7J494	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.987
C5167_003020	C5167_024382	A0A4Y7L1G6	A0A4Y7JPZ5	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.987
C5167_003020	C5167_032434	A0A4Y7L1G6	A0A4Y7KA67	Uncharacterized protein.	Uncharacterized protein.	0.848
C5167_003020	C5167_036700	A0A4Y7L1G6	A0A4Y7I8M1	Uncharacterized protein.	RRM domain-containing protein.	0.971
C5167_003020	C5167_046182	A0A4Y7L1G6	A0A4Y7LGW5	Uncharacterized protein.	RRM domain-containing protein.	0.971
C5167_003020	C5167_046354	A0A4Y7L1G6	A0A4Y7LF46	Uncharacterized protein.	MIF4G domain-containing protein.	0.406
C5167_003020	C5167_049932	A0A4Y7L1G6	A0A4Y7KNL5	Uncharacterized protein.	Uncharacterized protein.	0.848
C5167_003229	C5167_003020	A0A4Y7L0D6	A0A4Y7L1G6	Uncharacterized protein.	Uncharacterized protein.	0.971
C5167_003229	C5167_013363	A0A4Y7L0D6	A0A4Y7J3J3	Uncharacterized protein.	Mago-bind domain-containing protein.	0.954
C5167_003229	C5167_013403	A0A4Y7L0D6	A0A4Y7J494	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.961
C5167_003229	C5167_024382	A0A4Y7L0D6	A0A4Y7JPZ5	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.961
C5167_003229	C5167_032434	A0A4Y7L0D6	A0A4Y7KA67	Uncharacterized protein.	Uncharacterized protein.	0.981
C5167_003229	C5167_034865	A0A4Y7L0D6	A0A4Y7KHL3	Uncharacterized protein.	Btz domain-containing protein.	0.863
C5167_003229	C5167_046354	A0A4Y7L0D6	A0A4Y7LF46	Uncharacterized protein.	MIF4G domain-containing protein.	0.971
C5167_003229	C5167_049932	A0A4Y7L0D6	A0A4Y7KNL5	Uncharacterized protein.	Uncharacterized protein.	0.981
C5167_003229	C5167_050707	A0A4Y7L0D6	A0A4Y7KQV0	Uncharacterized protein.	Btz domain-containing protein.	0.863
C5167_011395	C5167_003020	A0A4Y7K2W9	A0A4Y7L1G6	RRM domain-containing protein.	Uncharacterized protein.	0.971