(19 nodes) WW domain network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_038624	WW domain-containing protein. (749 aa)
	C5167_039310	Uncharacterized protein. (1641 aa)
	C5167_017744	WW domain-containing protein. (243 aa)
	C5167_018937	Uncharacterized protein. (912 aa)
	C5167_019461	Uncharacterized protein. (907 aa)
	C5167_012741	EFG_IV domain-containing protein. (637 aa)
	C5167_013582	Uncharacterized protein. (1063 aa)
	C5167_023101	WW domain-containing protein. (383 aa)
	C5167_023392	Uncharacterized protein; Belongs to the DEAD box helicase family. (766 aa)
	C5167_024562	Uncharacterized protein. (1063 aa)
	C5167_009372	Uncharacterized protein. (1641 aa)
	C5167_010988	WW domain-containing protein. (748 aa)
	C5167_034548	Uncharacterized protein. (973 aa)
	C5167_048987	Uncharacterized protein. (894 aa)
	C5167_050483	Uncharacterized protein. (973 aa)
	C5167_015161	WW domain-containing protein. (205 aa)
	C5167_006487	Uncharacterized protein; Belongs to the DEAD box helicase family. (722 aa)
	C5167_005442	Uncharacterized protein. (526 aa)
	C5167_036353	WW domain-containing protein. (174 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_005442	C5167_023101	A0A4Y7JES7	A0A4Y7JMS0	Uncharacterized protein.	WW domain-containing protein.	0.900
C5167_010988	C5167_038624	A0A4Y7K4N8	A0A4Y7I9Q3	WW domain-containing protein.	WW domain-containing protein.	0.900
C5167_012741	C5167_034548	A0A4Y7J1G0	A0A4Y7KG66	EFG_IV domain-containing protein.	Uncharacterized protein.	0.414
C5167_012741	C5167_050483	A0A4Y7J1G0	A0A4Y7KRI7	EFG_IV domain-containing protein.	Uncharacterized protein.	0.414
C5167_013582	C5167_024562	A0A4Y7J3U9	A0A4Y7JQ09	Uncharacterized protein.	Uncharacterized protein.	0.900
C5167_023101	C5167_005442	A0A4Y7JMS0	A0A4Y7JES7	WW domain-containing protein.	Uncharacterized protein.	0.900
C5167_024562	C5167_013582	A0A4Y7JQ09	A0A4Y7J3U9	Uncharacterized protein.	Uncharacterized protein.	0.900
C5167_034548	C5167_012741	A0A4Y7KG66	A0A4Y7J1G0	Uncharacterized protein.	EFG_IV domain-containing protein.	0.414
C5167_034548	C5167_050483	A0A4Y7KG66	A0A4Y7KRI7	Uncharacterized protein.	Uncharacterized protein.	0.900
C5167_038624	C5167_010988	A0A4Y7I9Q3	A0A4Y7K4N8	WW domain-containing protein.	WW domain-containing protein.	0.900
C5167_050483	C5167_012741	A0A4Y7KRI7	A0A4Y7J1G0	Uncharacterized protein.	EFG_IV domain-containing protein.	0.414
C5167_050483	C5167_034548	A0A4Y7KRI7	A0A4Y7KG66	Uncharacterized protein.	Uncharacterized protein.	0.900