(36 nodes) BRCT domain network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_002687	Replication factor C subunit 1. (1000 aa)
	C5167_038103	BRCT domain-containing protein. (259 aa)
	C5167_037241	Uncharacterized protein. (1170 aa)
	C5167_040488	Uncharacterized protein. (557 aa)
	C5167_017467	BRCT domain-containing protein. (1533 aa)
	C5167_018798	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (305 aa)
	C5167_012113	BRCT domain-containing protein. (405 aa)
	C5167_013285	Uncharacterized protein. (930 aa)
	C5167_014282	Uncharacterized protein. (483 aa)
	C5167_014305	BRCT domain-containing protein. (1792 aa)
	C5167_015607	Uncharacterized protein. (1266 aa)
	C5167_015111	Uncharacterized protein. (1571 aa)
	C5167_004930	BRCT domain-containing protein. (482 aa)
	C5167_006170	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (577 aa)
	C5167_022067	Uncharacterized protein. (1170 aa)
	C5167_006965	Uncharacterized protein. (1156 aa)
	C5167_006709	Uncharacterized protein. (1351 aa)
	C5167_022266	Uncharacterized protein. (1355 aa)
	C5167_024112	Poly [ADP-ribose] polymerase. (992 aa)
	C5167_023304	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (587 aa)
	C5167_025361	Uncharacterized protein. (557 aa)
	C5167_009839	Uncharacterized protein. (1170 aa)
	C5167_031980	Poly [ADP-ribose] polymerase. (1018 aa)
	C5167_033069	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (556 aa)
	C5167_033404	Uncharacterized protein. (664 aa)
	C5167_033913	DNA ligase. (1233 aa)
	C5167_049087	RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II. (472 aa)
	C5167_050366	Uncharacterized protein. (658 aa)
	C5167_050757	BRCT domain-containing protein. (373 aa)
	C5167_002163	Uncharacterized protein. (685 aa)
	C5167_003749	BRCT domain-containing protein. (251 aa)
	C5167_042352	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (545 aa)
	C5167_003275	Uncharacterized protein. (811 aa)
	C5167_045514	Uncharacterized protein. (996 aa)
	C5167_046979	Replication factor C subunit 1. (997 aa)
	C5167_046228	Uncharacterized protein. (805 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002163	C5167_009839	A0A4Y7KXK6	A0A4Y7K2L0	Uncharacterized protein.	Uncharacterized protein.	0.498
C5167_002163	C5167_012113	A0A4Y7KXK6	A0A4Y7IYJ6	Uncharacterized protein.	BRCT domain-containing protein.	0.897
C5167_002163	C5167_013285	A0A4Y7KXK6	A0A4Y7IZW4	Uncharacterized protein.	Uncharacterized protein.	0.917
C5167_002163	C5167_015111	A0A4Y7KXK6	A0A4Y7J8Z1	Uncharacterized protein.	Uncharacterized protein.	0.897
C5167_002163	C5167_025361	A0A4Y7KXK6	A0A4Y7JS95	Uncharacterized protein.	Uncharacterized protein.	0.498
C5167_002163	C5167_033404	A0A4Y7KXK6	A0A4Y7KDH8	Uncharacterized protein.	Uncharacterized protein.	0.498
C5167_002163	C5167_037241	A0A4Y7KXK6	A0A4Y7I8Y3	Uncharacterized protein.	Uncharacterized protein.	0.498
C5167_002163	C5167_040488	A0A4Y7KXK6	A0A4Y7IIL0	Uncharacterized protein.	Uncharacterized protein.	0.498
C5167_002163	C5167_050366	A0A4Y7KXK6	A0A4Y7KPV2	Uncharacterized protein.	Uncharacterized protein.	0.498
C5167_002687	C5167_003749	A0A4Y7KYT3	A0A4Y7L1X8	Replication factor C subunit 1.	BRCT domain-containing protein.	0.487
C5167_002687	C5167_015607	A0A4Y7KYT3	A0A4Y7J6I4	Replication factor C subunit 1.	Uncharacterized protein.	0.605
C5167_002687	C5167_033069	A0A4Y7KYT3	A0A4Y7KD28	Replication factor C subunit 1.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.449
C5167_002687	C5167_033913	A0A4Y7KYT3	A0A4Y7KEF6	Replication factor C subunit 1.	DNA ligase.	0.605
C5167_002687	C5167_038103	A0A4Y7KYT3	A0A4Y7I8K6	Replication factor C subunit 1.	BRCT domain-containing protein.	0.670
C5167_002687	C5167_042352	A0A4Y7KYT3	A0A4Y7L2J3	Replication factor C subunit 1.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.449
C5167_002687	C5167_046979	A0A4Y7KYT3	A0A4Y7LFA5	Replication factor C subunit 1.	Replication factor C subunit 1.	0.900
C5167_002687	C5167_050757	A0A4Y7KYT3	A0A4Y7KR19	Replication factor C subunit 1.	BRCT domain-containing protein.	0.487
C5167_003749	C5167_002687	A0A4Y7L1X8	A0A4Y7KYT3	BRCT domain-containing protein.	Replication factor C subunit 1.	0.487
C5167_003749	C5167_004930	A0A4Y7L1X8	A0A4Y7J9X8	BRCT domain-containing protein.	BRCT domain-containing protein.	0.487
C5167_003749	C5167_015607	A0A4Y7L1X8	A0A4Y7J6I4	BRCT domain-containing protein.	Uncharacterized protein.	0.941