(103 nodes) Small GTPase network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_001574	Uncharacterized protein. (223 aa)
	C5167_047452	Uncharacterized protein. (263 aa)
	C5167_046783	Uncharacterized protein. (264 aa)
	C5167_013547	Uncharacterized protein. (214 aa)
	C5167_036985	Uncharacterized protein. (243 aa)
	C5167_037893	Uncharacterized protein. (197 aa)
	C5167_039044	Uncharacterized protein. (222 aa)
	C5167_038097	Uncharacterized protein. (216 aa)
	C5167_039523	Uncharacterized protein. (216 aa)
	C5167_038939	Uncharacterized protein. (188 aa)
	C5167_039242	Uncharacterized protein. (299 aa)
	C5167_040176	Uncharacterized protein. (126 aa)
	C5167_040198	Uncharacterized protein. (212 aa)
	C5167_039916	Uncharacterized protein. (111 aa)
	C5167_041118	Uncharacterized protein. (203 aa)
	C5167_041116	Uncharacterized protein. (222 aa)
	C5167_018311	Uncharacterized protein. (191 aa)
	C5167_017635	Uncharacterized protein. (336 aa)
	C5167_017041	Uncharacterized protein. (420 aa)
	C5167_018312	Uncharacterized protein. (203 aa)
	C5167_019299	Uncharacterized protein. (217 aa)
	C5167_020120	Uncharacterized protein. (160 aa)
	C5167_020123	Uncharacterized protein. (265 aa)
	C5167_019649	Miro domain-containing protein. (272 aa)
	C5167_019647	Mitochondrial Rho GTPase. (720 aa)
	C5167_020121	Uncharacterized protein. (170 aa)
	C5167_020794	Mitochondrial Rho GTPase. (645 aa)
	C5167_013185	Uncharacterized protein. (227 aa)
	C5167_013003	Uncharacterized protein. (329 aa)
	C5167_012521	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (335 aa)
	C5167_012883	Uncharacterized protein. (215 aa)
	C5167_012882	Uncharacterized protein. (206 aa)
	C5167_013313	Uncharacterized protein. (211 aa)
	C5167_014071	Uncharacterized protein. (197 aa)
	C5167_013901	Uncharacterized protein. (420 aa)
	C5167_013954	Uncharacterized protein. (206 aa)
	C5167_013420	Uncharacterized protein. (216 aa)
	C5167_014661	Uncharacterized protein. (176 aa)
	C5167_013340	Uncharacterized protein. (218 aa)
	C5167_013419	Uncharacterized protein. (201 aa)
	C5167_005512	Uncharacterized protein. (218 aa)
	C5167_006971	Uncharacterized protein. (222 aa)
	C5167_006189	Uncharacterized protein. (246 aa)
	C5167_006573	Uncharacterized protein. (105 aa)
	C5167_022093	Uncharacterized protein. (904 aa)
	C5167_023044	Uncharacterized protein. (218 aa)
	C5167_025029	Uncharacterized protein. (212 aa)
	C5167_024374	Uncharacterized protein. (216 aa)
	C5167_024932	Uncharacterized protein. (221 aa)
	C5167_024526	Uncharacterized protein. (214 aa)
	C5167_008960	Uncharacterized protein. (196 aa)
	C5167_008247	Uncharacterized protein. (228 aa)
	C5167_008128	Uncharacterized protein. (216 aa)
	C5167_008480	Uncharacterized protein. (207 aa)
	C5167_009649	Uncharacterized protein. (211 aa)
	C5167_008473	Uncharacterized protein. (335 aa)
	C5167_008957	Uncharacterized protein. (207 aa)
	C5167_009529	Uncharacterized protein. (222 aa)
	C5167_009303	Uncharacterized protein. (293 aa)
	C5167_010424	Uncharacterized protein. (198 aa)
	C5167_031781	Uncharacterized protein. (71 aa)
	C5167_032373	Uncharacterized protein. (199 aa)
	C5167_032447	Uncharacterized protein. (208 aa)
	C5167_033738	Uncharacterized protein. (224 aa)
	C5167_033758	Uncharacterized protein. (719 aa)
	C5167_032343	Uncharacterized protein. (204 aa)
	C5167_033314	Uncharacterized protein. (627 aa)
	C5167_033005	Uncharacterized protein. (213 aa)
	C5167_033757	Uncharacterized protein. (70 aa)
	C5167_034517	Uncharacterized protein. (211 aa)
	C5167_034899	Uncharacterized protein. (200 aa)
	C5167_048361	Uncharacterized protein. (871 aa)
	C5167_048239	Uncharacterized protein. (423 aa)
	C5167_048398	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (132 aa)
	C5167_048861	Uncharacterized protein. (193 aa)
	C5167_048860	Uncharacterized protein. (215 aa)
	C5167_049944	Uncharacterized protein. (199 aa)
	C5167_049994	Uncharacterized protein. (199 aa)
	C5167_050956	Uncharacterized protein. (241 aa)
	C5167_049714	Uncharacterized protein. (227 aa)
	C5167_001535	Uncharacterized protein. (197 aa)
	C5167_050433	Uncharacterized protein. (201 aa)
	C5167_050683	Uncharacterized protein. (427 aa)
	C5167_050869	Uncharacterized protein. (200 aa)
	C5167_051113	Uncharacterized protein. (210 aa)
	C5167_001162	Uncharacterized protein. (258 aa)
	C5167_001334	Uncharacterized protein. (246 aa)
	C5167_001337	Uncharacterized protein. (220 aa)
	C5167_001193	Uncharacterized protein. (205 aa)
	C5167_001488	Uncharacterized protein. (201 aa)
	C5167_001325	Uncharacterized protein. (199 aa)
	C5167_001197	Uncharacterized protein. (516 aa)
	C5167_002633	Uncharacterized protein. (217 aa)
	C5167_002900	Uncharacterized protein. (186 aa)
	C5167_042333	Uncharacterized protein. (237 aa)
	C5167_042503	Uncharacterized protein. (278 aa)
	C5167_043483	Mitochondrial Rho GTPase. (673 aa)
	C5167_043554	Uncharacterized protein. (250 aa)
	C5167_043168	Uncharacterized protein. (217 aa)
	C5167_044053	Uncharacterized protein. (172 aa)
	C5167_043633	Uncharacterized protein. (206 aa)
	C5167_044079	Uncharacterized protein. (256 aa)
	C5167_047001	Uncharacterized protein. (217 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001162	C5167_001337	A0A4Y7KVV2	A0A4Y7KWM5	Uncharacterized protein.	Uncharacterized protein.	0.539
C5167_001162	C5167_008247	A0A4Y7KVV2	A0A4Y7JX51	Uncharacterized protein.	Uncharacterized protein.	0.597
C5167_001162	C5167_008480	A0A4Y7KVV2	A0A4Y7JXS2	Uncharacterized protein.	Uncharacterized protein.	0.543
C5167_001162	C5167_013313	A0A4Y7KVV2	A0A4Y7J1Z2	Uncharacterized protein.	Uncharacterized protein.	0.524
C5167_001162	C5167_013954	A0A4Y7KVV2	A0A4Y7J2R3	Uncharacterized protein.	Uncharacterized protein.	0.541
C5167_001162	C5167_032447	A0A4Y7KVV2	A0A4Y7KAC0	Uncharacterized protein.	Uncharacterized protein.	0.597
C5167_001162	C5167_036985	A0A4Y7KVV2	A0A4Y7I5G9	Uncharacterized protein.	Uncharacterized protein.	0.562
C5167_001162	C5167_043633	A0A4Y7KVV2	A0A4Y7LA49	Uncharacterized protein.	Uncharacterized protein.	0.542
C5167_001162	C5167_044053	A0A4Y7KVV2	A0A4Y7L9X0	Uncharacterized protein.	Uncharacterized protein.	0.479
C5167_001162	C5167_050956	A0A4Y7KVV2	A0A4Y7KQ29	Uncharacterized protein.	Uncharacterized protein.	0.549
C5167_001334	C5167_008247	A0A4Y7KWD4	A0A4Y7JX51	Uncharacterized protein.	Uncharacterized protein.	0.401
C5167_001334	C5167_036985	A0A4Y7KWD4	A0A4Y7I5G9	Uncharacterized protein.	Uncharacterized protein.	0.407
C5167_001334	C5167_050956	A0A4Y7KWD4	A0A4Y7KQ29	Uncharacterized protein.	Uncharacterized protein.	0.401
C5167_001337	C5167_001162	A0A4Y7KWM5	A0A4Y7KVV2	Uncharacterized protein.	Uncharacterized protein.	0.539
C5167_001337	C5167_001488	A0A4Y7KWM5	A0A4Y7KY49	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_001337	C5167_008247	A0A4Y7KWM5	A0A4Y7JX51	Uncharacterized protein.	Uncharacterized protein.	0.775
C5167_001337	C5167_008480	A0A4Y7KWM5	A0A4Y7JXS2	Uncharacterized protein.	Uncharacterized protein.	0.535
C5167_001337	C5167_009649	A0A4Y7KWM5	A0A4Y7JY10	Uncharacterized protein.	Uncharacterized protein.	0.521
C5167_001337	C5167_013547	A0A4Y7KWM5	A0A4Y7J4V8	Uncharacterized protein.	Uncharacterized protein.	0.524
C5167_001337	C5167_013954	A0A4Y7KWM5	A0A4Y7J2R3	Uncharacterized protein.	Uncharacterized protein.	0.531