(31 nodes) Toll Like Receptor TLR6:TLR2 Cascade network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_046434	Uncharacterized protein. (206 aa)
	C5167_039163	Uncharacterized protein. (224 aa)
	C5167_040342	Uncharacterized protein. (106 aa)
	C5167_040349	Uncharacterized protein. (275 aa)
	C5167_017797	COR domain-containing protein. (1253 aa)
	C5167_019058	Uncharacterized protein. (242 aa)
	C5167_018937	Uncharacterized protein. (912 aa)
	C5167_019461	Uncharacterized protein. (907 aa)
	C5167_021055	Uncharacterized protein. (1326 aa)
	C5167_005598	Uncharacterized protein. (513 aa)
	C5167_004954	Peptidase_M48 domain-containing protein. (235 aa)
	C5167_006382	Serine/threonine-protein phosphatase. (305 aa)
	C5167_006491	Ubiquitin-like domain-containing protein. (157 aa)
	C5167_022846	Uncharacterized protein. (86 aa)
	C5167_022920	Vac14_Fab1_bd domain-containing protein. (587 aa)
	C5167_025219	PsaL domain-containing protein. (216 aa)
	C5167_025218	Uncharacterized protein. (205 aa)
	C5167_032998	Uncharacterized protein. (621 aa)
	C5167_035607	Uncharacterized protein. (587 aa)
	C5167_048987	Uncharacterized protein. (894 aa)
	C5167_048745	Uncharacterized protein. (97 aa)
	C5167_050295	Uncharacterized protein. (587 aa)
	C5167_000483	Uncharacterized protein. (214 aa)
	C5167_001796	Serine/threonine-protein phosphatase. (313 aa)
	C5167_001921	SER_THR_PHOSPHATASE domain-containing protein. (253 aa)
	C5167_042936	Uncharacterized protein. (213 aa)
	C5167_042359	Uncharacterized protein. (200 aa)
	C5167_042357	Uncharacterized protein. (101 aa)
	C5167_042618	Serine/threonine-protein phosphatase. (315 aa)
	C5167_045607	Serine/threonine-protein phosphatase. (313 aa)
	C5167_045748	Serine/threonine-protein phosphatase. (313 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001796	C5167_005598	A0A4Y7KXH6	A0A4Y7JB03	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.792
C5167_001796	C5167_006491	A0A4Y7KXH6	A0A4Y7JHF4	Serine/threonine-protein phosphatase.	Ubiquitin-like domain-containing protein.	0.635
C5167_001796	C5167_018937	A0A4Y7KXH6	A0A4Y7ISV1	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.792
C5167_001796	C5167_019461	A0A4Y7KXH6	A0A4Y7IU68	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.792
C5167_001796	C5167_022846	A0A4Y7KXH6	A0A4Y7JM16	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.792
C5167_001796	C5167_022920	A0A4Y7KXH6	A0A4Y7JMB5	Serine/threonine-protein phosphatase.	Vac14_Fab1_bd domain-containing protein.	0.792
C5167_001796	C5167_035607	A0A4Y7KXH6	A0A4Y7KBR1	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.792
C5167_001796	C5167_048987	A0A4Y7KXH6	A0A4Y7KKX5	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.792
C5167_001796	C5167_050295	A0A4Y7KXH6	A0A4Y7KSF6	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.792
C5167_001921	C5167_005598	A0A4Y7KZA1	A0A4Y7JB03	SER_THR_PHOSPHATASE domain-containing protein.	Uncharacterized protein.	0.792
C5167_001921	C5167_006491	A0A4Y7KZA1	A0A4Y7JHF4	SER_THR_PHOSPHATASE domain-containing protein.	Ubiquitin-like domain-containing protein.	0.635
C5167_001921	C5167_018937	A0A4Y7KZA1	A0A4Y7ISV1	SER_THR_PHOSPHATASE domain-containing protein.	Uncharacterized protein.	0.792
C5167_001921	C5167_019461	A0A4Y7KZA1	A0A4Y7IU68	SER_THR_PHOSPHATASE domain-containing protein.	Uncharacterized protein.	0.792
C5167_001921	C5167_022846	A0A4Y7KZA1	A0A4Y7JM16	SER_THR_PHOSPHATASE domain-containing protein.	Uncharacterized protein.	0.792
C5167_001921	C5167_022920	A0A4Y7KZA1	A0A4Y7JMB5	SER_THR_PHOSPHATASE domain-containing protein.	Vac14_Fab1_bd domain-containing protein.	0.792
C5167_001921	C5167_035607	A0A4Y7KZA1	A0A4Y7KBR1	SER_THR_PHOSPHATASE domain-containing protein.	Uncharacterized protein.	0.792
C5167_001921	C5167_048987	A0A4Y7KZA1	A0A4Y7KKX5	SER_THR_PHOSPHATASE domain-containing protein.	Uncharacterized protein.	0.792
C5167_001921	C5167_050295	A0A4Y7KZA1	A0A4Y7KSF6	SER_THR_PHOSPHATASE domain-containing protein.	Uncharacterized protein.	0.792
C5167_005598	C5167_001796	A0A4Y7JB03	A0A4Y7KXH6	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.792
C5167_005598	C5167_001921	A0A4Y7JB03	A0A4Y7KZA1	Uncharacterized protein.	SER_THR_PHOSPHATASE domain-containing protein.	0.792