(16 nodes) 3 exoribonuclease family, domain 1 network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_032108	Uncharacterized protein. (241 aa)
	C5167_009557	Uncharacterized protein. (346 aa)
	C5167_009911	Uncharacterized protein. (228 aa)
	C5167_045691	S1 motif domain-containing protein. (894 aa)
	C5167_047801	Uncharacterized protein. (578 aa)
	C5167_012973	Uncharacterized protein. (887 aa)
	C5167_040766	Uncharacterized protein. (762 aa)
	C5167_001451	Uncharacterized protein. (255 aa)
	C5167_002025	Uncharacterized protein. (876 aa)
	C5167_037320	Uncharacterized protein. (193 aa)
	C5167_043724	S1 motif domain-containing protein. (1050 aa)
	C5167_039048	Uncharacterized protein. (690 aa)
	C5167_048941	Uncharacterized protein. (442 aa)
	C5167_035251	S1 motif domain-containing protein. (1050 aa)
	C5167_049808	Uncharacterized protein. (241 aa)
	C5167_051171	Uncharacterized protein. (268 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001451	C5167_002025	A0A4Y7KVW0	A0A4Y7KWT6	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_001451	C5167_009557	A0A4Y7KVW0	A0A4Y7K1N4	Uncharacterized protein.	Uncharacterized protein.	0.980
C5167_001451	C5167_009911	A0A4Y7KVW0	A0A4Y7K064	Uncharacterized protein.	Uncharacterized protein.	0.875
C5167_001451	C5167_032108	A0A4Y7KVW0	A0A4Y7KAS1	Uncharacterized protein.	Uncharacterized protein.	0.874
C5167_001451	C5167_035251	A0A4Y7KVW0	A0A4Y7KJF0	Uncharacterized protein.	S1 motif domain-containing protein.	0.505
C5167_001451	C5167_037320	A0A4Y7KVW0	A0A4Y7IAC1	Uncharacterized protein.	Uncharacterized protein.	0.874
C5167_001451	C5167_039048	A0A4Y7KVW0	A0A4Y7IF02	Uncharacterized protein.	Uncharacterized protein.	0.981
C5167_001451	C5167_040766	A0A4Y7KVW0	A0A4Y7IJ97	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_001451	C5167_043724	A0A4Y7KVW0	A0A4Y7L6I4	Uncharacterized protein.	S1 motif domain-containing protein.	0.505
C5167_001451	C5167_045691	A0A4Y7KVW0	A0A4Y7LCF9	Uncharacterized protein.	S1 motif domain-containing protein.	0.505
C5167_001451	C5167_047801	A0A4Y7KVW0	A0A4Y7LKJ6	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_001451	C5167_048941	A0A4Y7KVW0	A0A4Y7KMR3	Uncharacterized protein.	Uncharacterized protein.	0.987
C5167_001451	C5167_049808	A0A4Y7KVW0	A0A4Y7KQB5	Uncharacterized protein.	Uncharacterized protein.	0.873
C5167_001451	C5167_051171	A0A4Y7KVW0	A0A4Y7KTK4	Uncharacterized protein.	Uncharacterized protein.	0.986
C5167_002025	C5167_001451	A0A4Y7KWT6	A0A4Y7KVW0	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_002025	C5167_009911	A0A4Y7KWT6	A0A4Y7K064	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_002025	C5167_032108	A0A4Y7KWT6	A0A4Y7KAS1	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_002025	C5167_037320	A0A4Y7KWT6	A0A4Y7IAC1	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_002025	C5167_049808	A0A4Y7KWT6	A0A4Y7KQB5	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_002025	C5167_051171	A0A4Y7KWT6	A0A4Y7KTK4	Uncharacterized protein.	Uncharacterized protein.	0.505