(62 nodes) Rab subfamily of small GTPases network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_024374	Uncharacterized protein. (216 aa)
	C5167_036985	Uncharacterized protein. (243 aa)
	C5167_039044	Uncharacterized protein. (222 aa)
	C5167_039523	Uncharacterized protein. (216 aa)
	C5167_038939	Uncharacterized protein. (188 aa)
	C5167_040198	Uncharacterized protein. (212 aa)
	C5167_041118	Uncharacterized protein. (203 aa)
	C5167_041116	Uncharacterized protein. (222 aa)
	C5167_018312	Uncharacterized protein. (203 aa)
	C5167_019299	Uncharacterized protein. (217 aa)
	C5167_020120	Uncharacterized protein. (160 aa)
	C5167_013185	Uncharacterized protein. (227 aa)
	C5167_012883	Uncharacterized protein. (215 aa)
	C5167_012882	Uncharacterized protein. (206 aa)
	C5167_013313	Uncharacterized protein. (211 aa)
	C5167_013954	Uncharacterized protein. (206 aa)
	C5167_013420	Uncharacterized protein. (216 aa)
	C5167_013340	Uncharacterized protein. (218 aa)
	C5167_013419	Uncharacterized protein. (201 aa)
	C5167_013547	Uncharacterized protein. (214 aa)
	C5167_005512	Uncharacterized protein. (218 aa)
	C5167_006971	Uncharacterized protein. (222 aa)
	C5167_023044	Uncharacterized protein. (218 aa)
	C5167_025029	Uncharacterized protein. (212 aa)
	C5167_024932	Uncharacterized protein. (221 aa)
	C5167_024526	Uncharacterized protein. (214 aa)
	C5167_008247	Uncharacterized protein. (228 aa)
	C5167_008128	Uncharacterized protein. (216 aa)
	C5167_008480	Uncharacterized protein. (207 aa)
	C5167_009649	Uncharacterized protein. (211 aa)
	C5167_008957	Uncharacterized protein. (207 aa)
	C5167_009529	Uncharacterized protein. (222 aa)
	C5167_032447	Uncharacterized protein. (208 aa)
	C5167_033738	Uncharacterized protein. (224 aa)
	C5167_033758	Uncharacterized protein. (719 aa)
	C5167_032343	Uncharacterized protein. (204 aa)
	C5167_033314	Uncharacterized protein. (627 aa)
	C5167_034517	Uncharacterized protein. (211 aa)
	C5167_034899	Uncharacterized protein. (200 aa)
	C5167_048861	Uncharacterized protein. (193 aa)
	C5167_048860	Uncharacterized protein. (215 aa)
	C5167_049944	Uncharacterized protein. (199 aa)
	C5167_050956	Uncharacterized protein. (241 aa)
	C5167_049714	Uncharacterized protein. (227 aa)
	C5167_001535	Uncharacterized protein. (197 aa)
	C5167_050433	Uncharacterized protein. (201 aa)
	C5167_050683	Uncharacterized protein. (427 aa)
	C5167_050869	Uncharacterized protein. (200 aa)
	C5167_001162	Uncharacterized protein. (258 aa)
	C5167_001334	Uncharacterized protein. (246 aa)
	C5167_001337	Uncharacterized protein. (220 aa)
	C5167_001193	Uncharacterized protein. (205 aa)
	C5167_001488	Uncharacterized protein. (201 aa)
	C5167_001197	Uncharacterized protein. (516 aa)
	C5167_002633	Uncharacterized protein. (217 aa)
	C5167_002900	Uncharacterized protein. (186 aa)
	C5167_043168	Uncharacterized protein. (217 aa)
	C5167_043633	Uncharacterized protein. (206 aa)
	C5167_047001	Uncharacterized protein. (217 aa)
	C5167_001574	Uncharacterized protein. (223 aa)
	C5167_047452	Uncharacterized protein. (263 aa)
	C5167_046783	Uncharacterized protein. (264 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001162	C5167_001337	A0A4Y7KVV2	A0A4Y7KWM5	Uncharacterized protein.	Uncharacterized protein.	0.539
C5167_001162	C5167_008247	A0A4Y7KVV2	A0A4Y7JX51	Uncharacterized protein.	Uncharacterized protein.	0.597
C5167_001162	C5167_008480	A0A4Y7KVV2	A0A4Y7JXS2	Uncharacterized protein.	Uncharacterized protein.	0.543
C5167_001162	C5167_013313	A0A4Y7KVV2	A0A4Y7J1Z2	Uncharacterized protein.	Uncharacterized protein.	0.524
C5167_001162	C5167_013954	A0A4Y7KVV2	A0A4Y7J2R3	Uncharacterized protein.	Uncharacterized protein.	0.541
C5167_001162	C5167_032447	A0A4Y7KVV2	A0A4Y7KAC0	Uncharacterized protein.	Uncharacterized protein.	0.597
C5167_001162	C5167_036985	A0A4Y7KVV2	A0A4Y7I5G9	Uncharacterized protein.	Uncharacterized protein.	0.562
C5167_001162	C5167_043633	A0A4Y7KVV2	A0A4Y7LA49	Uncharacterized protein.	Uncharacterized protein.	0.542
C5167_001162	C5167_050956	A0A4Y7KVV2	A0A4Y7KQ29	Uncharacterized protein.	Uncharacterized protein.	0.549
C5167_001334	C5167_008247	A0A4Y7KWD4	A0A4Y7JX51	Uncharacterized protein.	Uncharacterized protein.	0.401
C5167_001334	C5167_036985	A0A4Y7KWD4	A0A4Y7I5G9	Uncharacterized protein.	Uncharacterized protein.	0.407
C5167_001334	C5167_050956	A0A4Y7KWD4	A0A4Y7KQ29	Uncharacterized protein.	Uncharacterized protein.	0.401
C5167_001337	C5167_001162	A0A4Y7KWM5	A0A4Y7KVV2	Uncharacterized protein.	Uncharacterized protein.	0.539
C5167_001337	C5167_001488	A0A4Y7KWM5	A0A4Y7KY49	Uncharacterized protein.	Uncharacterized protein.	0.505
C5167_001337	C5167_008247	A0A4Y7KWM5	A0A4Y7JX51	Uncharacterized protein.	Uncharacterized protein.	0.775
C5167_001337	C5167_008480	A0A4Y7KWM5	A0A4Y7JXS2	Uncharacterized protein.	Uncharacterized protein.	0.535
C5167_001337	C5167_009649	A0A4Y7KWM5	A0A4Y7JY10	Uncharacterized protein.	Uncharacterized protein.	0.521
C5167_001337	C5167_013547	A0A4Y7KWM5	A0A4Y7J4V8	Uncharacterized protein.	Uncharacterized protein.	0.524
C5167_001337	C5167_013954	A0A4Y7KWM5	A0A4Y7J2R3	Uncharacterized protein.	Uncharacterized protein.	0.531
C5167_001337	C5167_024526	A0A4Y7KWM5	A0A4Y7JRW4	Uncharacterized protein.	Uncharacterized protein.	0.524