(63 nodes) Homologous recombination network (Papaver somniferum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5167_036472	RECA_3 domain-containing protein. (179 aa)
	C5167_037241	Uncharacterized protein. (1170 aa)
	C5167_039250	POLAc domain-containing protein. (646 aa)
	C5167_039572	Uncharacterized protein. (145 aa)
	C5167_017024	Helicase ATP-binding domain-containing protein. (1274 aa)
	C5167_040488	Uncharacterized protein. (557 aa)
	C5167_017872	Uncharacterized protein; Belongs to the RecA family. (474 aa)
	C5167_016846	Uncharacterized protein. (907 aa)
	C5167_020606	Uncharacterized protein. (998 aa)
	C5167_012113	BRCT domain-containing protein. (405 aa)
	C5167_021117	Uncharacterized protein; Belongs to the RecA family. (475 aa)
	C5167_021253	Uncharacterized protein. (407 aa)
	C5167_013285	Uncharacterized protein. (930 aa)
	C5167_012552	MPN domain-containing protein. (426 aa)
	C5167_013167	Uncharacterized protein. (392 aa)
	C5167_014094	ERCC4 domain-containing protein. (587 aa)
	C5167_015111	Uncharacterized protein. (1571 aa)
	C5167_015279	RPA_C domain-containing protein. (274 aa)
	C5167_005641	Uncharacterized protein. (215 aa)
	C5167_006453	Uncharacterized protein. (134 aa)
	C5167_006856	3'-5' exonuclease domain-containing protein. (550 aa)
	C5167_006445	Uncharacterized protein. (73 aa)
	C5167_006880	Uncharacterized protein; Belongs to the RecA family. (763 aa)
	C5167_022895	Uncharacterized protein. (224 aa)
	C5167_023073	Uncharacterized protein. (535 aa)
	C5167_024254	RECA_2 domain-containing protein. (336 aa)
	C5167_023351	Uncharacterized protein. (73 aa)
	C5167_023372	Uncharacterized protein. (134 aa)
	C5167_023828	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (391 aa)
	C5167_024345	DNA polymerase. (1062 aa)
	C5167_025361	Uncharacterized protein. (557 aa)
	C5167_024421	Uncharacterized protein. (1250 aa)
	C5167_009307	POLAc domain-containing protein. (646 aa)
	C5167_009839	Uncharacterized protein. (1170 aa)
	C5167_011492	Uncharacterized protein. (483 aa)
	C5167_032110	RECA_2 domain-containing protein. (336 aa)
	C5167_031923	Uncharacterized protein. (1264 aa)
	C5167_031660	Uncharacterized protein. (146 aa)
	C5167_031661	Uncharacterized protein. (258 aa)
	C5167_031939	Uncharacterized protein. (375 aa)
	C5167_032951	Uncharacterized protein. (848 aa)
	C5167_032942	Uncharacterized protein. (74 aa)
	C5167_032626	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (923 aa)
	C5167_032611	Uncharacterized protein. (124 aa)
	C5167_033404	Uncharacterized protein. (664 aa)
	C5167_034329	RPA_C domain-containing protein. (274 aa)
	C5167_034619	FHA domain-containing protein. (552 aa)
	C5167_035150	Uncharacterized protein. (138 aa)
	C5167_034961	Non-specific serine/threonine protein kinase. (3032 aa)
	C5167_035617	Non-specific serine/threonine protein kinase. (3032 aa)
	C5167_048780	RECA_2 domain-containing protein. (234 aa)
	C5167_049403	Uncharacterized protein. (117 aa)
	C5167_050366	Uncharacterized protein. (658 aa)
	C5167_050496	ERCC4 domain-containing protein. (623 aa)
	C5167_001019	RECA_2 domain-containing protein. (319 aa)
	C5167_002824	Uncharacterized protein. (106 aa)
	C5167_002389	Uncharacterized protein. (1043 aa)
	C5167_003292	Uncharacterized protein. (437 aa)
	C5167_042301	Uncharacterized protein. (74 aa)
	C5167_043085	RECA_2 domain-containing protein. (233 aa)
	C5167_044420	Uncharacterized protein. (258 aa)
	C5167_045956	Uncharacterized protein. (441 aa)
	C5167_046352	RECA_2 domain-containing protein. (374 aa)

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_001019	C5167_002389	A0A4Y7KVQ4	A0A4Y7L0G2	RECA_2 domain-containing protein.	Uncharacterized protein.	0.823
C5167_001019	C5167_016846	A0A4Y7KVQ4	A0A4Y7ILU3	RECA_2 domain-containing protein.	Uncharacterized protein.	0.610
C5167_001019	C5167_020606	A0A4Y7KVQ4	A0A4Y7ITI2	RECA_2 domain-containing protein.	Uncharacterized protein.	0.408
C5167_001019	C5167_024254	A0A4Y7KVQ4	A0A4Y7JN25	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.833
C5167_001019	C5167_024345	A0A4Y7KVQ4	A0A4Y7JRL6	RECA_2 domain-containing protein.	DNA polymerase.	0.447
C5167_001019	C5167_024421	A0A4Y7KVQ4	A0A4Y7JSJ2	RECA_2 domain-containing protein.	Uncharacterized protein.	0.562
C5167_001019	C5167_031923	A0A4Y7KVQ4	A0A4Y7K750	RECA_2 domain-containing protein.	Uncharacterized protein.	0.666
C5167_001019	C5167_032110	A0A4Y7KVQ4	A0A4Y7K6K3	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.833
C5167_001019	C5167_032951	A0A4Y7KVQ4	A0A4Y7K8X5	RECA_2 domain-containing protein.	Uncharacterized protein.	0.408
C5167_001019	C5167_034619	A0A4Y7KVQ4	A0A4Y7KHS7	RECA_2 domain-containing protein.	FHA domain-containing protein.	0.571
C5167_001019	C5167_034961	A0A4Y7KVQ4	A0A4Y7KI73	RECA_2 domain-containing protein.	Non-specific serine/threonine protein kinase.	0.429
C5167_001019	C5167_035617	A0A4Y7KVQ4	A0A4Y7KJ78	RECA_2 domain-containing protein.	Non-specific serine/threonine protein kinase.	0.429
C5167_001019	C5167_036472	A0A4Y7KVQ4	A0A4Y7I7Z5	RECA_2 domain-containing protein.	RECA_3 domain-containing protein.	0.530
C5167_001019	C5167_043085	A0A4Y7KVQ4	A0A4Y7L6D0	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.763
C5167_001019	C5167_046352	A0A4Y7KVQ4	A0A4Y7LH85	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.489
C5167_001019	C5167_048780	A0A4Y7KVQ4	A0A4Y7KMA7	RECA_2 domain-containing protein.	RECA_2 domain-containing protein.	0.763
C5167_001019	C5167_050496	A0A4Y7KVQ4	A0A4Y7KQ78	RECA_2 domain-containing protein.	ERCC4 domain-containing protein.	0.489
C5167_002389	C5167_001019	A0A4Y7L0G2	A0A4Y7KVQ4	Uncharacterized protein.	RECA_2 domain-containing protein.	0.823
C5167_002389	C5167_006445	A0A4Y7L0G2	A0A4Y7JGI6	Uncharacterized protein.	Uncharacterized protein.	0.990
C5167_002389	C5167_006856	A0A4Y7L0G2	A0A4Y7JGA4	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.484