17 items (Trachymyrmex septentrionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC56_05477	Uncharacterized protein. (201 aa)
	ALC56_08231	Uncharacterized protein. (201 aa)
	ALC56_09977	Polyubiquitin-A. (686 aa)
	ALC56_02362	KASH domain-containing protein. (1653 aa)
	ALC56_03287	F-box only protein 43. (502 aa)
	ALC56_06102	F-box/WD repeat-containing protein 1A. (523 aa)
	ALC56_05394	Dual specificity protein kinase Ttk. (973 aa)
	ALC56_06520	Serine/threonine-protein kinase Doa. (1147 aa)
	ALC56_08059	Baculoviral IAP repeat-containing protein 6. (4690 aa)
	ALC56_10469	Tyrosine-protein phosphatase non-receptor type 4. (909 aa)
	ALC56_11065	Thyroid receptor-interacting protein 13; Belongs to the AAA ATPase family. (392 aa)
	ALC56_11557	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (312 aa)
	ALC56_13359	Breast cancer type 2 susceptibility protein like protein. (1738 aa)
	ALC56_13257	Polyubiquitin-A. (459 aa)
	ALC56_03650	Uncharacterized protein. (137 aa)
	ALC56_03802	Uncharacterized protein. (182 aa)
	ALC56_04634	Checkpoint protein HUS1. (257 aa)

Your Current Organism:

Trachymyrmex septentrionalis

NCBI taxonomy Id: 34720
Other names: T. septentrionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC56_02362	ALC56_09977	A0A195FRG0	A0A151JU99	KASH domain-containing protein.	Polyubiquitin-A.	0.450
ALC56_02362	ALC56_13257	A0A195FRG0	A0A195EVV9	KASH domain-containing protein.	Polyubiquitin-A.	0.450
ALC56_03287	ALC56_06102	A0A195FQF5	A0A195FGU1	F-box only protein 43.	F-box/WD repeat-containing protein 1A.	0.870
ALC56_03287	ALC56_09977	A0A195FQF5	A0A151JU99	F-box only protein 43.	Polyubiquitin-A.	0.480
ALC56_03287	ALC56_13257	A0A195FQF5	A0A195EVV9	F-box only protein 43.	Polyubiquitin-A.	0.480
ALC56_03650	ALC56_08059	A0A151JZ96	A0A195FB61	Uncharacterized protein.	Baculoviral IAP repeat-containing protein 6.	0.425
ALC56_03802	ALC56_08059	A0A151JZ34	A0A195FB61	Uncharacterized protein.	Baculoviral IAP repeat-containing protein 6.	0.425
ALC56_04634	ALC56_11065	A0A151JYC2	A0A195F321	Checkpoint protein HUS1.	Thyroid receptor-interacting protein 13; Belongs to the AAA ATPase family.	0.417
ALC56_04634	ALC56_13359	A0A151JYC2	A0A195EWH5	Checkpoint protein HUS1.	Breast cancer type 2 susceptibility protein like protein.	0.542
ALC56_05394	ALC56_11065	A0A195FKC4	A0A195F321	Dual specificity protein kinase Ttk.	Thyroid receptor-interacting protein 13; Belongs to the AAA ATPase family.	0.689
ALC56_05477	ALC56_08059	A0A151JXX3	A0A195FB61	Uncharacterized protein.	Baculoviral IAP repeat-containing protein 6.	0.425
ALC56_06102	ALC56_03287	A0A195FGU1	A0A195FQF5	F-box/WD repeat-containing protein 1A.	F-box only protein 43.	0.870
ALC56_06102	ALC56_08059	A0A195FGU1	A0A195FB61	F-box/WD repeat-containing protein 1A.	Baculoviral IAP repeat-containing protein 6.	0.722
ALC56_06102	ALC56_09977	A0A195FGU1	A0A151JU99	F-box/WD repeat-containing protein 1A.	Polyubiquitin-A.	0.889
ALC56_06102	ALC56_11557	A0A195FGU1	A0A195F1L0	F-box/WD repeat-containing protein 1A.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.524
ALC56_06102	ALC56_13257	A0A195FGU1	A0A195EVV9	F-box/WD repeat-containing protein 1A.	Polyubiquitin-A.	0.889
ALC56_08059	ALC56_03650	A0A195FB61	A0A151JZ96	Baculoviral IAP repeat-containing protein 6.	Uncharacterized protein.	0.425
ALC56_08059	ALC56_03802	A0A195FB61	A0A151JZ34	Baculoviral IAP repeat-containing protein 6.	Uncharacterized protein.	0.425
ALC56_08059	ALC56_05477	A0A195FB61	A0A151JXX3	Baculoviral IAP repeat-containing protein 6.	Uncharacterized protein.	0.425
ALC56_08059	ALC56_06102	A0A195FB61	A0A195FGU1	Baculoviral IAP repeat-containing protein 6.	F-box/WD repeat-containing protein 1A.	0.722