16 items (Trachymyrmex septentrionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC56_03647	Neurobeachin. (3188 aa)
	ALC56_11818	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	ALC56_09977	Polyubiquitin-A. (686 aa)
	ALC56_13257	Polyubiquitin-A. (459 aa)
	ALC56_13344	Hairy/enhancer-of-split related with YRPW motif protein. (412 aa)
	ALC56_11251	Protein neuralized. (634 aa)
	ALC56_10455	E3 ubiquitin-protein ligase MIB1. (401 aa)
	ALC56_09167	Protein deadpan. (454 aa)
	ALC56_09174	Protein hairy. (347 aa)
	ALC56_08478	Neurobeachin. (204 aa)
	ALC56_08483	Uncharacterized protein. (169 aa)
	ALC56_08480	Uncharacterized protein. (90 aa)
	ALC56_08485	Uncharacterized protein. (97 aa)
	ALC56_04465	Protein deltex-4. (522 aa)
	ALC56_01898	Ubiquitin-60S ribosomal protein L40. (128 aa)
	ALC56_01027	E3 ubiquitin-protein ligase Su(Dx). (1185 aa)

Your Current Organism:

Trachymyrmex septentrionalis

NCBI taxonomy Id: 34720
Other names: T. septentrionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC56_01027	ALC56_01898	A0A195FXL4	A0A195FT85	E3 ubiquitin-protein ligase Su(Dx).	Ubiquitin-60S ribosomal protein L40.	0.961
ALC56_01027	ALC56_04465	A0A195FXL4	A0A195FN43	E3 ubiquitin-protein ligase Su(Dx).	Protein deltex-4.	0.948
ALC56_01027	ALC56_09977	A0A195FXL4	A0A151JU99	E3 ubiquitin-protein ligase Su(Dx).	Polyubiquitin-A.	0.933
ALC56_01027	ALC56_11818	A0A195FXL4	A0A151JTF5	E3 ubiquitin-protein ligase Su(Dx).	Ubiquitin-40S ribosomal protein S27a.	0.963
ALC56_01027	ALC56_13257	A0A195FXL4	A0A195EVV9	E3 ubiquitin-protein ligase Su(Dx).	Polyubiquitin-A.	0.933
ALC56_01898	ALC56_01027	A0A195FT85	A0A195FXL4	Ubiquitin-60S ribosomal protein L40.	E3 ubiquitin-protein ligase Su(Dx).	0.961
ALC56_01898	ALC56_04465	A0A195FT85	A0A195FN43	Ubiquitin-60S ribosomal protein L40.	Protein deltex-4.	0.743
ALC56_01898	ALC56_09977	A0A195FT85	A0A151JU99	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-A.	0.993
ALC56_01898	ALC56_10455	A0A195FT85	A0A195F3X4	Ubiquitin-60S ribosomal protein L40.	E3 ubiquitin-protein ligase MIB1.	0.738
ALC56_01898	ALC56_11818	A0A195FT85	A0A151JTF5	Ubiquitin-60S ribosomal protein L40.	Ubiquitin-40S ribosomal protein S27a.	0.999
ALC56_01898	ALC56_13257	A0A195FT85	A0A195EVV9	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-A.	0.986
ALC56_04465	ALC56_01027	A0A195FN43	A0A195FXL4	Protein deltex-4.	E3 ubiquitin-protein ligase Su(Dx).	0.948
ALC56_04465	ALC56_01898	A0A195FN43	A0A195FT85	Protein deltex-4.	Ubiquitin-60S ribosomal protein L40.	0.743
ALC56_04465	ALC56_09977	A0A195FN43	A0A151JU99	Protein deltex-4.	Polyubiquitin-A.	0.820
ALC56_04465	ALC56_11818	A0A195FN43	A0A151JTF5	Protein deltex-4.	Ubiquitin-40S ribosomal protein S27a.	0.825
ALC56_04465	ALC56_13257	A0A195FN43	A0A195EVV9	Protein deltex-4.	Polyubiquitin-A.	0.820
ALC56_09167	ALC56_13344	A0A195F7P6	A0A195EWG0	Protein deadpan.	Hairy/enhancer-of-split related with YRPW motif protein.	0.535
ALC56_09174	ALC56_13344	A0A195F830	A0A195EWG0	Protein hairy.	Hairy/enhancer-of-split related with YRPW motif protein.	0.535
ALC56_09977	ALC56_01027	A0A151JU99	A0A195FXL4	Polyubiquitin-A.	E3 ubiquitin-protein ligase Su(Dx).	0.933
ALC56_09977	ALC56_01898	A0A151JU99	A0A195FT85	Polyubiquitin-A.	Ubiquitin-60S ribosomal protein L40.	0.993