17 items (Trachymyrmex septentrionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC56_14051	AP-2 complex subunit alpha; Adaptins are components of the adapter complexes which link clathrin to receptors in coated vesicles. (939 aa)
	ALC56_03660	Glutamate receptor 1. (882 aa)
	ALC56_03691	Glutamate receptor delta-2 subunit. (858 aa)
	ALC56_14584	Uncharacterized protein. (472 aa)
	ALC56_14585	Glutamate receptor, ionotropic kainate 3; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (501 aa)
	ALC56_14464	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (122 aa)
	ALC56_13737	Glutamate receptor delta-2 subunit. (501 aa)
	ALC56_11752	Tetraspanin. (1116 aa)
	ALC56_11751	Transmembrane protein 35. (156 aa)
	ALC56_07836	Vesicle-fusing ATPase 1. (761 aa)
	ALC56_07433	AP complex subunit beta. (917 aa)
	ALC56_04786	Glutamate receptor-interacting protein 2. (638 aa)
	ALC56_05264	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (739 aa)
	ALC56_04414	Uncharacterized protein. (723 aa)
	ALC56_04413	Uncharacterized protein. (1075 aa)
	ALC56_03401	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (442 aa)
	ALC56_01030	PRKCA-binding protein. (403 aa)

Your Current Organism:

Trachymyrmex septentrionalis

NCBI taxonomy Id: 34720
Other names: T. septentrionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC56_01030	ALC56_03660	A0A195FW94	A0A151JZ81	PRKCA-binding protein.	Glutamate receptor 1.	0.931
ALC56_01030	ALC56_03691	A0A195FW94	A0A151JZC1	PRKCA-binding protein.	Glutamate receptor delta-2 subunit.	0.427
ALC56_01030	ALC56_04786	A0A195FW94	A0A195FJQ8	PRKCA-binding protein.	Glutamate receptor-interacting protein 2.	0.874
ALC56_01030	ALC56_05264	A0A195FW94	A0A195FJY9	PRKCA-binding protein.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.838
ALC56_01030	ALC56_07836	A0A195FW94	A0A195FBP9	PRKCA-binding protein.	Vesicle-fusing ATPase 1.	0.799
ALC56_01030	ALC56_11751	A0A195FW94	A0A195F192	PRKCA-binding protein.	Transmembrane protein 35.	0.710
ALC56_01030	ALC56_11752	A0A195FW94	A0A195F0D5	PRKCA-binding protein.	Tetraspanin.	0.710
ALC56_01030	ALC56_13737	A0A195FW94	A0A195EVR4	PRKCA-binding protein.	Glutamate receptor delta-2 subunit.	0.427
ALC56_01030	ALC56_14051	A0A195FW94	A0A151JTU0	PRKCA-binding protein.	AP-2 complex subunit alpha; Adaptins are components of the adapter complexes which link clathrin to receptors in coated vesicles.	0.681
ALC56_03401	ALC56_03660	A0A195FP83	A0A151JZ81	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Glutamate receptor 1.	0.723
ALC56_03401	ALC56_04786	A0A195FP83	A0A195FJQ8	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Glutamate receptor-interacting protein 2.	0.691
ALC56_03401	ALC56_07433	A0A195FP83	A0A195FDW1	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP complex subunit beta.	0.999
ALC56_03401	ALC56_14051	A0A195FP83	A0A151JTU0	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adapter complexes which link clathrin to receptors in coated vesicles.	0.998
ALC56_03401	ALC56_14464	A0A195FP83	A0A195ESR2	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
ALC56_03660	ALC56_01030	A0A151JZ81	A0A195FW94	Glutamate receptor 1.	PRKCA-binding protein.	0.931
ALC56_03660	ALC56_03401	A0A151JZ81	A0A195FP83	Glutamate receptor 1.	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.723
ALC56_03660	ALC56_04786	A0A151JZ81	A0A195FJQ8	Glutamate receptor 1.	Glutamate receptor-interacting protein 2.	0.963
ALC56_03660	ALC56_05264	A0A151JZ81	A0A195FJY9	Glutamate receptor 1.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.731
ALC56_03660	ALC56_07433	A0A151JZ81	A0A195FDW1	Glutamate receptor 1.	AP complex subunit beta.	0.676
ALC56_03660	ALC56_07836	A0A151JZ81	A0A195FBP9	Glutamate receptor 1.	Vesicle-fusing ATPase 1.	0.842