41 items (Trachymyrmex septentrionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC56_06245	Uncharacterized protein. (163 aa)
	ALC56_11808	Uncharacterized protein. (213 aa)
	ALC56_11818	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	ALC56_11642	Uncharacterized protein. (510 aa)
	ALC56_11662	Cell division protein kinase 7; Belongs to the protein kinase superfamily. (338 aa)
	ALC56_09977	Polyubiquitin-A. (686 aa)
	ALC56_09118	General transcription factor IIH subunit 1. (559 aa)
	ALC56_04638	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (320 aa)
	ALC56_02531	Ubiquitin-like domain-containing protein. (246 aa)
	ALC56_01199	TFIIH basal transcription factor complex helicase XPD subunit. (774 aa)
	ALC56_02495	Uncharacterized protein. (62 aa)
	ALC56_15256	Replication protein A 32 kDa subunit. (241 aa)
	ALC56_15113	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	ALC56_15258	Uncharacterized protein. (259 aa)
	ALC56_14782	Uncharacterized protein. (444 aa)
	ALC56_14902	Uncharacterized protein C16orf73 like protein. (473 aa)
	ALC56_14615	Uncharacterized protein. (115 aa)
	ALC56_14933	General transcription factor IIH subunit 2. (433 aa)
	ALC56_14784	SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. (159 aa)
	ALC56_14142	DNA repair protein complementing XP-C cells like protein. (956 aa)
	ALC56_14886	DNA repair protein complementing XP-A cells like protein. (262 aa)
	ALC56_13257	Polyubiquitin-A. (459 aa)
	ALC56_13102	Uncharacterized protein. (1124 aa)
	ALC56_12640	DNA damage-binding protein 1. (1138 aa)
	ALC56_12793	Uncharacterized protein. (170 aa)
	ALC56_11218	RING-box protein 1A. (200 aa)
	ALC56_10170	Gamma-glutamylcyclotransferase. (170 aa)
	ALC56_09634	General transcription factor IIH subunit 3. (314 aa)
	ALC56_09292	Cyclin-H; Belongs to the cyclin family. (331 aa)
	ALC56_06770	Small ubiquitin-related modifier. (87 aa)
	ALC56_06807	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (596 aa)
	ALC56_06246	DNA repair endonuclease XPF. (924 aa)
	ALC56_06430	DNA excision repair protein ERCC-1. (262 aa)
	ALC56_04537	Small ubiquitin-related modifier. (126 aa)
	ALC56_04790	DNA excision repair protein haywire. (741 aa)
	ALC56_03585	Cullin-4B; Belongs to the cullin family. (849 aa)
	ALC56_02688	Uncharacterized protein. (234 aa)
	ALC56_03462	UV excision repair protein RAD23 like protein B. (360 aa)
	ALC56_02777	Poly [ADP-ribose] polymerase. (981 aa)
	ALC56_01898	Ubiquitin-60S ribosomal protein L40. (128 aa)
	ALC56_01976	KxDL domain-containing protein. (212 aa)

Your Current Organism:

Trachymyrmex septentrionalis

NCBI taxonomy Id: 34720
Other names: T. septentrionalis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC56_01199	ALC56_02495	A0A151K0U4	A0A151K0Y5	TFIIH basal transcription factor complex helicase XPD subunit.	Uncharacterized protein.	0.679
ALC56_01199	ALC56_02531	A0A151K0U4	A0A151K0B6	TFIIH basal transcription factor complex helicase XPD subunit.	Ubiquitin-like domain-containing protein.	0.671
ALC56_01199	ALC56_02688	A0A151K0U4	A0A195FQM9	TFIIH basal transcription factor complex helicase XPD subunit.	Uncharacterized protein.	0.679
ALC56_01199	ALC56_02777	A0A151K0U4	A0A195FRQ8	TFIIH basal transcription factor complex helicase XPD subunit.	Poly [ADP-ribose] polymerase.	0.743
ALC56_01199	ALC56_03462	A0A151K0U4	A0A195FQZ2	TFIIH basal transcription factor complex helicase XPD subunit.	UV excision repair protein RAD23 like protein B.	0.863
ALC56_01199	ALC56_03585	A0A151K0U4	A0A195FNM7	TFIIH basal transcription factor complex helicase XPD subunit.	Cullin-4B; Belongs to the cullin family.	0.783
ALC56_01199	ALC56_04537	A0A151K0U4	A0A195FL38	TFIIH basal transcription factor complex helicase XPD subunit.	Small ubiquitin-related modifier.	0.673
ALC56_01199	ALC56_04638	A0A151K0U4	A0A151JY57	TFIIH basal transcription factor complex helicase XPD subunit.	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.	0.998
ALC56_01199	ALC56_04790	A0A151K0U4	A0A195FLN2	TFIIH basal transcription factor complex helicase XPD subunit.	DNA excision repair protein haywire.	0.998
ALC56_01199	ALC56_06245	A0A151K0U4	A0A151JX60	TFIIH basal transcription factor complex helicase XPD subunit.	Uncharacterized protein.	0.679
ALC56_01199	ALC56_06246	A0A151K0U4	A0A195FF53	TFIIH basal transcription factor complex helicase XPD subunit.	DNA repair endonuclease XPF.	0.881
ALC56_01199	ALC56_06430	A0A151K0U4	A0A195FG53	TFIIH basal transcription factor complex helicase XPD subunit.	DNA excision repair protein ERCC-1.	0.862
ALC56_01199	ALC56_06770	A0A151K0U4	A0A195FEG7	TFIIH basal transcription factor complex helicase XPD subunit.	Small ubiquitin-related modifier.	0.686
ALC56_01199	ALC56_06807	A0A151K0U4	A0A195FEH8	TFIIH basal transcription factor complex helicase XPD subunit.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.810
ALC56_01199	ALC56_09118	A0A151K0U4	A0A151JUN4	TFIIH basal transcription factor complex helicase XPD subunit.	General transcription factor IIH subunit 1.	0.998
ALC56_01199	ALC56_09292	A0A151K0U4	A0A195F817	TFIIH basal transcription factor complex helicase XPD subunit.	Cyclin-H; Belongs to the cyclin family.	0.996
ALC56_01199	ALC56_09634	A0A151K0U4	A0A195F5U4	TFIIH basal transcription factor complex helicase XPD subunit.	General transcription factor IIH subunit 3.	0.998
ALC56_01199	ALC56_09977	A0A151K0U4	A0A151JU99	TFIIH basal transcription factor complex helicase XPD subunit.	Polyubiquitin-A.	0.708
ALC56_01199	ALC56_10170	A0A151K0U4	A0A195F4U9	TFIIH basal transcription factor complex helicase XPD subunit.	Gamma-glutamylcyclotransferase.	0.711
ALC56_01199	ALC56_11218	A0A151K0U4	A0A195F3S0	TFIIH basal transcription factor complex helicase XPD subunit.	RING-box protein 1A.	0.712