23 items (Trachymyrmex septentrionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC56_02158	KH domain-containing, RNA-binding, signal transduction-associated protein 2. (384 aa)
	ALC56_03080	Cold shock domain-containing protein E1. (877 aa)
	ALC56_06113	ELMO domain-containing protein 2. (312 aa)
	ALC56_06788	Paxillin. (122 aa)
	ALC56_01898	Ubiquitin-60S ribosomal protein L40. (128 aa)
	ALC56_01976	KxDL domain-containing protein. (212 aa)
	ALC56_10170	Gamma-glutamylcyclotransferase. (170 aa)
	ALC56_09794	Engulfment and cell motility protein 1. (719 aa)
	ALC56_09349	Dedicator of cytokinesis protein 1; Belongs to the DOCK family. (2053 aa)
	ALC56_07271	Ras-like protein 1. (188 aa)
	ALC56_07272	Ras GTPase-activating protein 1. (929 aa)
	ALC56_06789	Paxillin. (527 aa)
	ALC56_10319	Ras-related protein Ral-a. (201 aa)
	ALC56_10930	Hrp65 protein. (625 aa)
	ALC56_11934	Leucine-rich repeat serine/threonine-protein kinase 1. (2487 aa)
	ALC56_13257	Polyubiquitin-A. (459 aa)
	ALC56_14708	Uncharacterized protein. (1667 aa)
	ALC56_14705	Ras-like GTP-binding protein Rho1. (187 aa)
	ALC56_02509	E3 ubiquitin-protein ligase CBL-B. (584 aa)
	ALC56_02507	E3 ubiquitin-protein ligase CBL-B. (199 aa)
	ALC56_08147	Adapter molecule Crk. (270 aa)
	ALC56_09977	Polyubiquitin-A. (686 aa)
	ALC56_11818	Ubiquitin-40S ribosomal protein S27a. (156 aa)

Your Current Organism:

Trachymyrmex septentrionalis

NCBI taxonomy Id: 34720
Other names: T. septentrionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC56_01898	ALC56_02507	A0A195FT85	A0A151K028	Ubiquitin-60S ribosomal protein L40.	E3 ubiquitin-protein ligase CBL-B.	0.894
ALC56_01898	ALC56_02509	A0A195FT85	A0A151K0E0	Ubiquitin-60S ribosomal protein L40.	E3 ubiquitin-protein ligase CBL-B.	0.894
ALC56_01898	ALC56_03080	A0A195FT85	A0A195FRJ8	Ubiquitin-60S ribosomal protein L40.	Cold shock domain-containing protein E1.	0.743
ALC56_01898	ALC56_07271	A0A195FT85	A0A195FCW5	Ubiquitin-60S ribosomal protein L40.	Ras-like protein 1.	0.743
ALC56_01898	ALC56_09977	A0A195FT85	A0A151JU99	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-A.	0.993
ALC56_01898	ALC56_10170	A0A195FT85	A0A195F4U9	Ubiquitin-60S ribosomal protein L40.	Gamma-glutamylcyclotransferase.	0.997
ALC56_01898	ALC56_10319	A0A195FT85	A0A195F3I9	Ubiquitin-60S ribosomal protein L40.	Ras-related protein Ral-a.	0.743
ALC56_01898	ALC56_11818	A0A195FT85	A0A151JTF5	Ubiquitin-60S ribosomal protein L40.	Ubiquitin-40S ribosomal protein S27a.	0.999
ALC56_01898	ALC56_11934	A0A195FT85	A0A195F0J5	Ubiquitin-60S ribosomal protein L40.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.983
ALC56_01898	ALC56_13257	A0A195FT85	A0A195EVV9	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-A.	0.986
ALC56_01898	ALC56_14705	A0A195FT85	A0A195ERP2	Ubiquitin-60S ribosomal protein L40.	Ras-like GTP-binding protein Rho1.	0.767
ALC56_01976	ALC56_09977	A0A195FV17	A0A151JU99	KxDL domain-containing protein.	Polyubiquitin-A.	0.728
ALC56_01976	ALC56_10170	A0A195FV17	A0A195F4U9	KxDL domain-containing protein.	Gamma-glutamylcyclotransferase.	0.854
ALC56_01976	ALC56_11818	A0A195FV17	A0A151JTF5	KxDL domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.923
ALC56_01976	ALC56_11934	A0A195FV17	A0A195F0J5	KxDL domain-containing protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.412
ALC56_01976	ALC56_13257	A0A195FV17	A0A195EVV9	KxDL domain-containing protein.	Polyubiquitin-A.	0.728
ALC56_02158	ALC56_07272	A0A195FT07	A0A195FDE9	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	Ras GTPase-activating protein 1.	0.774
ALC56_02158	ALC56_08147	A0A195FT07	A0A151JVS7	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	Adapter molecule Crk.	0.458
ALC56_02158	ALC56_11934	A0A195FT07	A0A195F0J5	KH domain-containing, RNA-binding, signal transduction-associated protein 2.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.570
ALC56_02507	ALC56_01898	A0A151K028	A0A195FT85	E3 ubiquitin-protein ligase CBL-B.	Ubiquitin-60S ribosomal protein L40.	0.894