10 items (Trachymyrmex septentrionalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC56_11818	Ubiquitin-40S ribosomal protein S27a. (156 aa)
	ALC56_09977	Polyubiquitin-A. (686 aa)
	ALC56_13257	Polyubiquitin-A. (459 aa)
	ALC56_12083	Cullin-1; Belongs to the cullin family. (777 aa)
	ALC56_11182	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (162 aa)
	ALC56_11218	RING-box protein 1A. (200 aa)
	ALC56_10569	Transcription factor MafG; Belongs to the bZIP family. (121 aa)
	ALC56_08455	Uncharacterized protein. (644 aa)
	ALC56_01898	Ubiquitin-60S ribosomal protein L40. (128 aa)
	ALC56_00876	S-phase kinase-associated protein 2. (703 aa)

Your Current Organism:

Trachymyrmex septentrionalis

NCBI taxonomy Id: 34720
Other names: T. septentrionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC56_00876	ALC56_01898	A0A195FW45	A0A195FT85	S-phase kinase-associated protein 2.	Ubiquitin-60S ribosomal protein L40.	0.911
ALC56_00876	ALC56_09977	A0A195FW45	A0A151JU99	S-phase kinase-associated protein 2.	Polyubiquitin-A.	0.899
ALC56_00876	ALC56_11182	A0A195FW45	A0A195F2K6	S-phase kinase-associated protein 2.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.999
ALC56_00876	ALC56_11218	A0A195FW45	A0A195F3S0	S-phase kinase-associated protein 2.	RING-box protein 1A.	0.994
ALC56_00876	ALC56_11818	A0A195FW45	A0A151JTF5	S-phase kinase-associated protein 2.	Ubiquitin-40S ribosomal protein S27a.	0.931
ALC56_00876	ALC56_12083	A0A195FW45	A0A195EZ15	S-phase kinase-associated protein 2.	Cullin-1; Belongs to the cullin family.	0.999
ALC56_00876	ALC56_13257	A0A195FW45	A0A195EVV9	S-phase kinase-associated protein 2.	Polyubiquitin-A.	0.899
ALC56_01898	ALC56_00876	A0A195FT85	A0A195FW45	Ubiquitin-60S ribosomal protein L40.	S-phase kinase-associated protein 2.	0.911
ALC56_01898	ALC56_08455	A0A195FT85	A0A195F9D4	Ubiquitin-60S ribosomal protein L40.	Uncharacterized protein.	0.516
ALC56_01898	ALC56_09977	A0A195FT85	A0A151JU99	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-A.	0.993
ALC56_01898	ALC56_11182	A0A195FT85	A0A195F2K6	Ubiquitin-60S ribosomal protein L40.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.975
ALC56_01898	ALC56_11218	A0A195FT85	A0A195F3S0	Ubiquitin-60S ribosomal protein L40.	RING-box protein 1A.	0.976
ALC56_01898	ALC56_11818	A0A195FT85	A0A151JTF5	Ubiquitin-60S ribosomal protein L40.	Ubiquitin-40S ribosomal protein S27a.	0.999
ALC56_01898	ALC56_12083	A0A195FT85	A0A195EZ15	Ubiquitin-60S ribosomal protein L40.	Cullin-1; Belongs to the cullin family.	0.936
ALC56_01898	ALC56_13257	A0A195FT85	A0A195EVV9	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-A.	0.986
ALC56_08455	ALC56_01898	A0A195F9D4	A0A195FT85	Uncharacterized protein.	Ubiquitin-60S ribosomal protein L40.	0.516
ALC56_08455	ALC56_11818	A0A195F9D4	A0A151JTF5	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.503
ALC56_09977	ALC56_00876	A0A151JU99	A0A195FW45	Polyubiquitin-A.	S-phase kinase-associated protein 2.	0.899
ALC56_09977	ALC56_01898	A0A151JU99	A0A195FT85	Polyubiquitin-A.	Ubiquitin-60S ribosomal protein L40.	0.993
ALC56_09977	ALC56_11182	A0A151JU99	A0A195F2K6	Polyubiquitin-A.	S-phase kinase-associated protein 1; Belongs to the SKP1 family.	0.979