(6 nodes) Mixed, incl. Elongation Factor 3, chromodomain-like insertion superfamily, and Ribosomal protein L10e network (Exophiala xenobiotica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_08046	Uncharacterized protein. (342 aa)
	PV05_10967	Uncharacterized protein. (1067 aa)
	PV05_11473	60S ribosomal protein L10-A. (223 aa)
	PV05_09856	Uncharacterized protein. (1119 aa)
	PV05_10272	Uncharacterized protein. (429 aa)
	PV05_00792	Uncharacterized protein. (454 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV05_00792	PV05_08046	A0A0D2FKC2	A0A0D2CQY6	Uncharacterized protein.	Uncharacterized protein.	0.981
PV05_00792	PV05_09856	A0A0D2FKC2	A0A0D2E8V7	Uncharacterized protein.	Uncharacterized protein.	0.988
PV05_00792	PV05_10272	A0A0D2FKC2	A0A0D2EUQ2	Uncharacterized protein.	Uncharacterized protein.	0.983
PV05_00792	PV05_10967	A0A0D2FKC2	A0A0D2E1E2	Uncharacterized protein.	Uncharacterized protein.	0.993
PV05_00792	PV05_11473	A0A0D2FKC2	A0A0D2E2U8	Uncharacterized protein.	60S ribosomal protein L10-A.	0.980
PV05_08046	PV05_00792	A0A0D2CQY6	A0A0D2FKC2	Uncharacterized protein.	Uncharacterized protein.	0.981
PV05_08046	PV05_09856	A0A0D2CQY6	A0A0D2E8V7	Uncharacterized protein.	Uncharacterized protein.	0.986
PV05_08046	PV05_10272	A0A0D2CQY6	A0A0D2EUQ2	Uncharacterized protein.	Uncharacterized protein.	0.984
PV05_08046	PV05_10967	A0A0D2CQY6	A0A0D2E1E2	Uncharacterized protein.	Uncharacterized protein.	0.988
PV05_08046	PV05_11473	A0A0D2CQY6	A0A0D2E2U8	Uncharacterized protein.	60S ribosomal protein L10-A.	0.978
PV05_09856	PV05_00792	A0A0D2E8V7	A0A0D2FKC2	Uncharacterized protein.	Uncharacterized protein.	0.988
PV05_09856	PV05_08046	A0A0D2E8V7	A0A0D2CQY6	Uncharacterized protein.	Uncharacterized protein.	0.986
PV05_09856	PV05_10272	A0A0D2E8V7	A0A0D2EUQ2	Uncharacterized protein.	Uncharacterized protein.	0.986
PV05_09856	PV05_10967	A0A0D2E8V7	A0A0D2E1E2	Uncharacterized protein.	Uncharacterized protein.	0.997
PV05_09856	PV05_11473	A0A0D2E8V7	A0A0D2E2U8	Uncharacterized protein.	60S ribosomal protein L10-A.	0.988
PV05_10272	PV05_00792	A0A0D2EUQ2	A0A0D2FKC2	Uncharacterized protein.	Uncharacterized protein.	0.983
PV05_10272	PV05_08046	A0A0D2EUQ2	A0A0D2CQY6	Uncharacterized protein.	Uncharacterized protein.	0.984
PV05_10272	PV05_09856	A0A0D2EUQ2	A0A0D2E8V7	Uncharacterized protein.	Uncharacterized protein.	0.986
PV05_10272	PV05_10967	A0A0D2EUQ2	A0A0D2E1E2	Uncharacterized protein.	Uncharacterized protein.	0.986
PV05_10272	PV05_11473	A0A0D2EUQ2	A0A0D2E2U8	Uncharacterized protein.	60S ribosomal protein L10-A.	0.979