(14 nodes) Mixed, incl. Telomere localization, and Estrogen biosynthesis network (Exophiala xenobiotica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_00526	HTH APSES-type domain-containing protein. (402 aa)
	PV05_00671	SUN domain-containing protein. (617 aa)
	PV05_01972	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (325 aa)
	PV05_10831	Uncharacterized protein. (708 aa)
	PV05_03004	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (373 aa)
	PV05_03229	Cupin_2 domain-containing protein. (557 aa)
	PV05_10904	Uncharacterized protein. (317 aa)
	PV05_11471	Uncharacterized protein. (704 aa)
	PV05_11862	ANK_REP_REGION domain-containing protein. (178 aa)
	PV05_02357	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (287 aa)
	PV05_03650	Uncharacterized protein. (1812 aa)
	PV05_00179	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (310 aa)
	PV05_00268	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (331 aa)
	PV05_01956	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (262 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV05_00268	PV05_00526	A0A0D2EZE2	A0A0D2C5U9	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	HTH APSES-type domain-containing protein.	0.625
PV05_00268	PV05_01956	A0A0D2EZE2	A0A0D2F4G6	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625
PV05_00268	PV05_01972	A0A0D2EZE2	A0A0D2CA90	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625
PV05_00268	PV05_02357	A0A0D2EZE2	A0A0D2EQ69	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625
PV05_00268	PV05_03229	A0A0D2EZE2	A0A0D2D8R8	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Cupin_2 domain-containing protein.	0.653
PV05_00526	PV05_00268	A0A0D2C5U9	A0A0D2EZE2	HTH APSES-type domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625
PV05_00526	PV05_00671	A0A0D2C5U9	A0A0D2C6E7	HTH APSES-type domain-containing protein.	SUN domain-containing protein.	0.882
PV05_00526	PV05_11471	A0A0D2C5U9	A0A0D2E4Z0	HTH APSES-type domain-containing protein.	Uncharacterized protein.	0.877
PV05_00671	PV05_00526	A0A0D2C6E7	A0A0D2C5U9	SUN domain-containing protein.	HTH APSES-type domain-containing protein.	0.882
PV05_00671	PV05_01956	A0A0D2C6E7	A0A0D2F4G6	SUN domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.658
PV05_00671	PV05_01972	A0A0D2C6E7	A0A0D2CA90	SUN domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.658
PV05_00671	PV05_02357	A0A0D2C6E7	A0A0D2EQ69	SUN domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.658
PV05_00671	PV05_11471	A0A0D2C6E7	A0A0D2E4Z0	SUN domain-containing protein.	Uncharacterized protein.	0.808
PV05_01956	PV05_00268	A0A0D2F4G6	A0A0D2EZE2	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625
PV05_01956	PV05_00671	A0A0D2F4G6	A0A0D2C6E7	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	SUN domain-containing protein.	0.658
PV05_01956	PV05_11471	A0A0D2F4G6	A0A0D2E4Z0	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.659
PV05_01972	PV05_00268	A0A0D2CA90	A0A0D2EZE2	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625
PV05_01972	PV05_00671	A0A0D2CA90	A0A0D2C6E7	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	SUN domain-containing protein.	0.658
PV05_01972	PV05_11471	A0A0D2CA90	A0A0D2E4Z0	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.659
PV05_02357	PV05_00268	A0A0D2EQ69	A0A0D2EZE2	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.625