19 items (Exophiala xenobiotica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_09300	Uncharacterized protein. (1281 aa)
	PV05_10536	WD_REPEATS_REGION domain-containing protein. (338 aa)
	PV05_07926	Uncharacterized protein. (234 aa)
	PV05_04993	Small nuclear ribonucleoprotein G. (69 aa)
	PV05_05854	Sm domain-containing protein. (152 aa)
	PV05_10381	Uncharacterized protein. (426 aa)
	PV05_04700	Uncharacterized protein. (353 aa)
	PV05_05666	Uncharacterized protein. (420 aa)
	PV05_03677	Uncharacterized protein. (725 aa)
	PV05_01596	Uncharacterized protein. (306 aa)
	PV05_07907	Nop domain-containing protein. (601 aa)
	PV05_07576	Pre-mRNA-processing-splicing factor 8, variant. (2358 aa)
	PV05_05853	Uncharacterized protein. (160 aa)
	PV05_03709	Tudor domain-containing protein. (293 aa)
	PV05_10094	Tr-type G domain-containing protein. (982 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
	PV05_00650	Small nuclear ribonucleoprotein Sm D2. (187 aa)
	PV05_01001	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
	PV05_06435	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (183 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	PV05_00650	A0A0D2EUF0	A0A0D2F0I4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.990
LSM4	PV05_01001	A0A0D2EUF0	A0A0D2F1I5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.985
LSM4	PV05_01596	A0A0D2EUF0	A0A0D2DGP5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.930
LSM4	PV05_03677	A0A0D2EUF0	A0A0D2DA63	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.971
LSM4	PV05_04993	A0A0D2EUF0	A0A0D2BV17	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.972
LSM4	PV05_05853	A0A0D2EUF0	A0A0D2ERB1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.930
LSM4	PV05_05854	A0A0D2EUF0	A0A0D2BXX3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.987
LSM4	PV05_06435	A0A0D2EUF0	A0A0D2F299	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.844
LSM4	PV05_07576	A0A0D2EUF0	A0A0D2EIP4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pre-mRNA-processing-splicing factor 8, variant.	0.969
LSM4	PV05_07907	A0A0D2EUF0	A0A0D2EC25	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nop domain-containing protein.	0.978
LSM4	PV05_07926	A0A0D2EUF0	A0A0D2BIS3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.489
LSM4	PV05_09300	A0A0D2EUF0	A0A0D2BEB1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.987
LSM4	PV05_10094	A0A0D2EUF0	A0A0D2EU70	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Tr-type G domain-containing protein.	0.960
PV05_00650	LSM4	A0A0D2F0I4	A0A0D2EUF0	Small nuclear ribonucleoprotein Sm D2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990
PV05_00650	PV05_01001	A0A0D2F0I4	A0A0D2F1I5	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
PV05_00650	PV05_01596	A0A0D2F0I4	A0A0D2DGP5	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.991
PV05_00650	PV05_03677	A0A0D2F0I4	A0A0D2DA63	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.993
PV05_00650	PV05_03709	A0A0D2F0I4	A0A0D2EU57	Small nuclear ribonucleoprotein Sm D2.	Tudor domain-containing protein.	0.708
PV05_00650	PV05_04993	A0A0D2F0I4	A0A0D2BV17	Small nuclear ribonucleoprotein Sm D2.	Small nuclear ribonucleoprotein G.	0.999
PV05_00650	PV05_05853	A0A0D2F0I4	A0A0D2ERB1	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.991