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PV05_09300 PV05_09300 PV05_10536 PV05_10536 PV05_07926 PV05_07926 PV05_04993 PV05_04993 PV05_05854 PV05_05854 PV05_10381 PV05_10381 PV05_04700 PV05_04700 PV05_05666 PV05_05666 PV05_03677 PV05_03677 PV05_01596 PV05_01596 PV05_07907 PV05_07907 PV05_07576 PV05_07576 PV05_05853 PV05_05853 PV05_03709 PV05_03709 PV05_10094 PV05_10094 LSM4 LSM4 PV05_00650 PV05_00650 PV05_01001 PV05_01001 PV05_06435 PV05_06435
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PV05_09300Uncharacterized protein. (1281 aa)
PV05_10536WD_REPEATS_REGION domain-containing protein. (338 aa)
PV05_07926Uncharacterized protein. (234 aa)
PV05_04993Small nuclear ribonucleoprotein G. (69 aa)
PV05_05854Sm domain-containing protein. (152 aa)
PV05_10381Uncharacterized protein. (426 aa)
PV05_04700Uncharacterized protein. (353 aa)
PV05_05666Uncharacterized protein. (420 aa)
PV05_03677Uncharacterized protein. (725 aa)
PV05_01596Uncharacterized protein. (306 aa)
PV05_07907Nop domain-containing protein. (601 aa)
PV05_07576Pre-mRNA-processing-splicing factor 8, variant. (2358 aa)
PV05_05853Uncharacterized protein. (160 aa)
PV05_03709Tudor domain-containing protein. (293 aa)
PV05_10094Tr-type G domain-containing protein. (982 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
PV05_00650Small nuclear ribonucleoprotein Sm D2. (187 aa)
PV05_01001Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
PV05_06435U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (183 aa)
Your Current Organism:
Exophiala xenobiotica
NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica
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