16 items (Exophiala xenobiotica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_04993	Small nuclear ribonucleoprotein G. (69 aa)
	PV05_05854	Sm domain-containing protein. (152 aa)
	PV05_00741	Uncharacterized protein. (1685 aa)
	PV05_09535	Sm domain-containing protein. (225 aa)
	PV05_04054	Uncharacterized protein. (294 aa)
	PV05_01001	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
	PV05_00650	Small nuclear ribonucleoprotein Sm D2. (187 aa)
	PV05_11431	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (130 aa)
	PV05_11344	Uncharacterized protein. (473 aa)
	PV05_01596	Uncharacterized protein. (306 aa)
	PV05_00234	Uncharacterized protein. (252 aa)
	PV05_00138	RRM domain-containing protein. (412 aa)
	PV05_02014	Uncharacterized protein. (561 aa)
	PV05_05676	Uncharacterized protein. (935 aa)
	PV05_06435	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (183 aa)
	PV05_07742	Uncharacterized protein. (764 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV05_00138	PV05_00234	A0A0D2DC63	A0A0D2DCK7	RRM domain-containing protein.	Uncharacterized protein.	0.972
PV05_00138	PV05_00650	A0A0D2DC63	A0A0D2F0I4	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.997
PV05_00138	PV05_00741	A0A0D2DC63	A0A0D2C6P4	RRM domain-containing protein.	Uncharacterized protein.	0.937
PV05_00138	PV05_01001	A0A0D2DC63	A0A0D2F1I5	RRM domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.995
PV05_00138	PV05_01596	A0A0D2DC63	A0A0D2DGP5	RRM domain-containing protein.	Uncharacterized protein.	0.954
PV05_00138	PV05_02014	A0A0D2DC63	A0A0D2FPS8	RRM domain-containing protein.	Uncharacterized protein.	0.960
PV05_00138	PV05_04054	A0A0D2DC63	A0A0D2DBE7	RRM domain-containing protein.	Uncharacterized protein.	0.989
PV05_00138	PV05_04993	A0A0D2DC63	A0A0D2BV17	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.996
PV05_00138	PV05_05676	A0A0D2DC63	A0A0D2FAN3	RRM domain-containing protein.	Uncharacterized protein.	0.989
PV05_00138	PV05_05854	A0A0D2DC63	A0A0D2BXX3	RRM domain-containing protein.	Sm domain-containing protein.	0.992
PV05_00138	PV05_06435	A0A0D2DC63	A0A0D2F299	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.996
PV05_00138	PV05_07742	A0A0D2DC63	A0A0D2BIE4	RRM domain-containing protein.	Uncharacterized protein.	0.949
PV05_00138	PV05_09535	A0A0D2DC63	A0A0D2CLK1	RRM domain-containing protein.	Sm domain-containing protein.	0.989
PV05_00138	PV05_11431	A0A0D2DC63	A0A0D2EPP5	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.996
PV05_00234	PV05_00138	A0A0D2DCK7	A0A0D2DC63	Uncharacterized protein.	RRM domain-containing protein.	0.972
PV05_00234	PV05_00650	A0A0D2DCK7	A0A0D2F0I4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.978
PV05_00234	PV05_00741	A0A0D2DCK7	A0A0D2C6P4	Uncharacterized protein.	Uncharacterized protein.	0.567
PV05_00234	PV05_01001	A0A0D2DCK7	A0A0D2F1I5	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.987
PV05_00234	PV05_01596	A0A0D2DCK7	A0A0D2DGP5	Uncharacterized protein.	Uncharacterized protein.	0.909
PV05_00234	PV05_02014	A0A0D2DCK7	A0A0D2FPS8	Uncharacterized protein.	Uncharacterized protein.	0.555