28 items (Exophiala xenobiotica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_01662	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (476 aa)
	PV05_11809	Aspartate-semialdehyde dehydrogenase. (366 aa)
	PV05_10101	Beta_elim_lyase domain-containing protein. (420 aa)
	PV05_07324	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (319 aa)
	PV05_05896	Phosphoserine transaminase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (431 aa)
	PV05_05903	Homoserine O-acetyltransferase. (531 aa)
	PV05_01472	PALP domain-containing protein. (438 aa)
	PV05_08449	Aminotran_5 domain-containing protein. (535 aa)
	PV05_08803	Homoserine dehydrogenase. (363 aa)
	PV05_06268	O-acetylhomoserine (Thiol)-lyase. (461 aa)
	PV05_06777	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (393 aa)
	PV05_04619	Cystathionine beta-lyase. (464 aa)
	PV05_04029	D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (605 aa)
	PV05_08097	Phosphoserine phosphatase SerB. (485 aa)
	PV05_07827	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate. (217 aa)
	PV05_02058	Uncharacterized protein. (495 aa)
	MET3	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family. (573 aa)
	PV05_04678	PALP domain-containing protein. (416 aa)
	PV05_06029	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (523 aa)
	PV05_02395	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (465 aa)
	PV05_02555	Cysteine synthase. (386 aa)
	PV05_10409	Pyridoxine biosynthesis protein pyroA; Belongs to the PdxS/SNZ family. (320 aa)
	PV05_08098	Phosphoadenosine phosphosulfate reductase. (324 aa)
	PV05_04090	DHFR domain-containing protein; Belongs to the dihydrofolate reductase family. (421 aa)
	PV05_01339	Beta_elim_lyase domain-containing protein. (401 aa)
	PV05_01369	PALP domain-containing protein. (373 aa)
	PV05_01446	Beta_elim_lyase domain-containing protein. (346 aa)
	PV05_01645	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (554 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MET3	PV05_01645	A0A0D2ECR6	A0A0D2F0W6	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.465
MET3	PV05_02058	A0A0D2ECR6	A0A0D2FQ07	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family.	Uncharacterized protein.	0.448
MET3	PV05_06268	A0A0D2ECR6	A0A0D2CUS9	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family.	O-acetylhomoserine (Thiol)-lyase.	0.448
MET3	PV05_07827	A0A0D2ECR6	A0A0D2EBU7	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.989
MET3	PV05_08098	A0A0D2ECR6	A0A0D2EXD3	Sulfate adenylyltransferase; Catalyzes the first intracellular reaction of sulfate assimilation, forming adenosine-5'-phosphosulfate (APS) from inorganic sulfate and ATP. Plays an important role in sulfate activation as a component of the biosynthesis pathway of sulfur-containing amino acids. In the N-terminal section; belongs to the sulfate adenylyltransferase family.	Phosphoadenosine phosphosulfate reductase.	0.967
PV05_01339	PV05_01369	A0A0D2EZR2	A0A0D2EZV2	Beta_elim_lyase domain-containing protein.	PALP domain-containing protein.	0.557
PV05_01339	PV05_01472	A0A0D2EZR2	A0A0D2C8Q0	Beta_elim_lyase domain-containing protein.	PALP domain-containing protein.	0.761
PV05_01339	PV05_01645	A0A0D2EZR2	A0A0D2F0W6	Beta_elim_lyase domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.586
PV05_01339	PV05_01662	A0A0D2EZR2	A0A0D2F0X8	Beta_elim_lyase domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.835
PV05_01339	PV05_02395	A0A0D2EZR2	A0A0D2EQ95	Beta_elim_lyase domain-containing protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.771
PV05_01339	PV05_02555	A0A0D2EZR2	A0A0D2EQR3	Beta_elim_lyase domain-containing protein.	Cysteine synthase.	0.549
PV05_01339	PV05_04678	A0A0D2EZR2	A0A0D2EMQ0	Beta_elim_lyase domain-containing protein.	PALP domain-containing protein.	0.549
PV05_01339	PV05_06029	A0A0D2EZR2	A0A0D2EPN7	Beta_elim_lyase domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.835
PV05_01339	PV05_08097	A0A0D2EZR2	A0A0D2EAX8	Beta_elim_lyase domain-containing protein.	Phosphoserine phosphatase SerB.	0.769
PV05_01339	PV05_08449	A0A0D2EZR2	A0A0D2CS27	Beta_elim_lyase domain-containing protein.	Aminotran_5 domain-containing protein.	0.855
PV05_01369	PV05_01339	A0A0D2EZV2	A0A0D2EZR2	PALP domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.557
PV05_01369	PV05_01446	A0A0D2EZV2	A0A0D2F042	PALP domain-containing protein.	Beta_elim_lyase domain-containing protein.	0.557
PV05_01369	PV05_01645	A0A0D2EZV2	A0A0D2F0W6	PALP domain-containing protein.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.774
PV05_01369	PV05_01662	A0A0D2EZV2	A0A0D2F0X8	PALP domain-containing protein.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.634
PV05_01369	PV05_02058	A0A0D2EZV2	A0A0D2FQ07	PALP domain-containing protein.	Uncharacterized protein.	0.506