47 items (Exophiala xenobiotica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PV05_07460	Uncharacterized protein. (374 aa)
	PV05_08200	Matrin-type domain-containing protein. (235 aa)
	PV05_10068	Uncharacterized protein. (990 aa)
	PV05_11344	Uncharacterized protein. (473 aa)
	PV05_00234	Uncharacterized protein. (252 aa)
	PV05_00138	RRM domain-containing protein. (412 aa)
	PV05_04054	Uncharacterized protein. (294 aa)
	PV05_03545	G-patch domain-containing protein. (648 aa)
	PV05_05348	Cwf21 domain-containing protein. (180 aa)
	PV05_07551	Uncharacterized protein; Belongs to the cytochrome P450 family. (509 aa)
	PV05_06559	Uncharacterized protein. (298 aa)
	PV05_09189	PSP domain-containing protein. (1125 aa)
	PV05_11821	Uncharacterized protein. (537 aa)
	PV05_07742	Uncharacterized protein. (764 aa)
	PV05_06277	Uncharacterized protein. (634 aa)
	PV05_07071	Sm domain-containing protein. (134 aa)
	PV05_07909	Pre-mRNA-splicing factor clf1. (676 aa)
	PV05_07756	Uncharacterized protein. (371 aa)
	PV05_10381	Uncharacterized protein. (426 aa)
	PV05_09535	Sm domain-containing protein. (225 aa)
	PV05_04993	Small nuclear ribonucleoprotein G. (69 aa)
	PV05_07635	Uncharacterized protein; Belongs to the cytochrome P450 family. (501 aa)
	PV05_07094	Pre-mRNA-splicing factor rse1. (1210 aa)
	PV05_02130	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1410 aa)
	PV05_02014	Uncharacterized protein. (561 aa)
	PV05_00566	J domain-containing protein. (258 aa)
	PV05_00236	Pre-mRNA-splicing factor syf1. (854 aa)
	PV05_03589	Uncharacterized protein. (463 aa)
	PV05_02834	Uncharacterized protein. (624 aa)
	PV05_02769	Matrin-type domain-containing protein. (517 aa)
	PV05_06100	Uncharacterized protein. (667 aa)
	PV05_05676	Uncharacterized protein. (935 aa)
	PV05_02064	RRM domain-containing protein. (197 aa)
	PV05_06435	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (183 aa)
	PV05_01666	SF3b1 domain-containing protein. (1203 aa)
	PV05_01264	Pre-mRNA-splicing factor slt11. (374 aa)
	PV05_00315	MFAP1 domain-containing protein. (518 aa)
	PV05_01019	Uncharacterized protein. (248 aa)
	PV05_08060	Uncharacterized protein. (597 aa)
	PV05_07996	U1-type domain-containing protein. (299 aa)
	PV05_00364	Uncharacterized protein. (1232 aa)
	PV05_10094	Tr-type G domain-containing protein. (982 aa)
	PV05_06006	Uncharacterized protein. (336 aa)
	PV05_11431	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (130 aa)
	PV05_11362	Uncharacterized protein. (638 aa)
	PV05_04464	C2H2-type domain-containing protein. (161 aa)
	PV05_04995	Uncharacterized protein. (478 aa)

Your Current Organism:

Exophiala xenobiotica

NCBI taxonomy Id: 348802
Other names: CBS 118157, E. xenobiotica

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PV05_00138	PV05_00234	A0A0D2DC63	A0A0D2DCK7	RRM domain-containing protein.	Uncharacterized protein.	0.972
PV05_00138	PV05_00315	A0A0D2DC63	A0A0D2EZI1	RRM domain-containing protein.	MFAP1 domain-containing protein.	0.466
PV05_00138	PV05_00364	A0A0D2DC63	A0A0D2EWK8	RRM domain-containing protein.	Uncharacterized protein.	0.573
PV05_00138	PV05_01019	A0A0D2DC63	A0A0D2EYL4	RRM domain-containing protein.	Uncharacterized protein.	0.988
PV05_00138	PV05_01666	A0A0D2DC63	A0A0D2F0Y3	RRM domain-containing protein.	SF3b1 domain-containing protein.	0.973
PV05_00138	PV05_02014	A0A0D2DC63	A0A0D2FPS8	RRM domain-containing protein.	Uncharacterized protein.	0.960
PV05_00138	PV05_02064	A0A0D2DC63	A0A0D2F504	RRM domain-containing protein.	RRM domain-containing protein.	0.972
PV05_00138	PV05_02769	A0A0D2DC63	A0A0D2FDT5	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.922
PV05_00138	PV05_03545	A0A0D2DC63	A0A0D2D9X3	RRM domain-containing protein.	G-patch domain-containing protein.	0.517
PV05_00138	PV05_04054	A0A0D2DC63	A0A0D2DBE7	RRM domain-containing protein.	Uncharacterized protein.	0.989
PV05_00138	PV05_04464	A0A0D2DC63	A0A0D2ELZ0	RRM domain-containing protein.	C2H2-type domain-containing protein.	0.457
PV05_00138	PV05_04993	A0A0D2DC63	A0A0D2BV17	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.996
PV05_00138	PV05_05348	A0A0D2DC63	A0A0D2D2S7	RRM domain-containing protein.	Cwf21 domain-containing protein.	0.909
PV05_00138	PV05_05676	A0A0D2DC63	A0A0D2FAN3	RRM domain-containing protein.	Uncharacterized protein.	0.989
PV05_00138	PV05_06006	A0A0D2DC63	A0A0D2ERT4	RRM domain-containing protein.	Uncharacterized protein.	0.955
PV05_00138	PV05_06100	A0A0D2DC63	A0A0D2FBY3	RRM domain-containing protein.	Uncharacterized protein.	0.573
PV05_00138	PV05_06435	A0A0D2DC63	A0A0D2F299	RRM domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.996
PV05_00138	PV05_07071	A0A0D2DC63	A0A0D2BQC5	RRM domain-containing protein.	Sm domain-containing protein.	0.613
PV05_00138	PV05_07094	A0A0D2DC63	A0A0D2BQF0	RRM domain-containing protein.	Pre-mRNA-splicing factor rse1.	0.942
PV05_00138	PV05_07742	A0A0D2DC63	A0A0D2BIE4	RRM domain-containing protein.	Uncharacterized protein.	0.949